Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0412 ATGGGTAGAGTTTGTTGGCCATATTTCGATCCCGAATACGAGAACTTGAGCATCCGAATCAACCCTCCGAGGGTCTCAGTAGATAATACTAGTTGCAGTGATTGCACTCTGGTTAAGGTTGATAGCATGAACAAACCGGGAATCCTTTTAGAAGTCGTCCAAATACTAACGGACCTTGACCTTATTATCACCAAAGCTTACATTTCCTCTGATGGTGGATGGTTCATGGATGTTTTTCATGTCACTGATCAACAAGGCAAGAAGATAACAGACGGAAAAACAATCGACTTCATAGAGAAGGCTTTAGGACCAATGGGTCGCACAAAAGATGGGCTAAAGACATGGCCCGGAAAAAGGGTCGGGGTCCACTCCCTCGGTGACCATACAGCCATCGAGCTAATTGGGTGGGACCGACCCGGTCTCCTATCTGAAATCTCCGCTGTCTTAGCCAACCTTCACTTCAACATTGTTGCGGCCGAGGTATGGACACATAACAGCCGTATAGCTTGTGTCGTCTATGTTAATGATGATACCACAAACCAGGCGGTCAATGACCCGAGTAGACTCTCAATCATGGAGGAACAACTCAAGAACATTTTACGAGCTTGTTATCATCATCACGATGAGAAGGTGGCTCAGACCAGCTTCTCGGTCGGGTTCACCCACGTGGACCGTCGGCTTCATCAGATGTTGTTTGCTGATAGGGATTATGAACGTGGACTGGTGACAAGTAGTACCGAGTTGGAACATTCACCGCCTTCTTTTAGACCGAAGATTGTAATCGAGCATTGTGTTGAGAAAGGGTACTCTGTTATTAGTGTGAAATGCAAAGACAGGGCGAAGCTGTTGTTCGATATTGTCTGTACTCTTACGGATATGCAATATGTTGTTTTCCATGCGACCATTTCGTCTGAAGGTCCTTATGCAACACAGGAGTATTATATTCGTCACATGGATGGATGTACACTTGACACTGAAGGAGAAAAGGAAAGAGTGATCAAATGTATCGAAGCAGCGATTCGAAGAAGAGTAAGCGAGGGTGTTAGTCTTGAGCTTTGTGCAAAGGATAGAGTAGGCTTGCTGTCAGAAGTAACAAGAATCTTGAGGGAGCACGGTTTAACGGTATCAAGGGCAGGGGTGACGACGGTGGGGGAGCAAGCGATGAGCGTATTCTACATCCGAGAGGCTTCCGGAAGTCCGGTGGATATGACGAAGATAGAAGAAGCTCTCCAGAAGGAAATCGGACATACCATGATGCTTAATGTGAAGAAGGACCCGGGAAGTACTACTGCCGAGACTGATTCCGAGGCTAGTCATGGATGGGCCAAGACAAGCTTCTTCTTCGGTAACTTGTTTGGAAAAAGTTATTGA 1371 46.24 MGRVCWPYFDPEYENLSIRINPPRVSVDNTSCSDCTLVKVDSMNKPGILLEVVQILTDLDLIITKAYISSDGGWFMDVFHVTDQQGKKITDGKTIDFIEKALGPMGRTKDGLKTWPGKRVGVHSLGDHTAIELIGWDRPGLLSEISAVLANLHFNIVAAEVWTHNSRIACVVYVNDDTTNQAVNDPSRLSIMEEQLKNILRACYHHHDEKVAQTSFSVGFTHVDRRLHQMLFADRDYERGLVTSSTELEHSPPSFRPKIVIEHCVEKGYSVISVKCKDRAKLLFDIVCTLTDMQYVVFHATISSEGPYATQEYYIRHMDGCTLDTEGEKERVIKCIEAAIRRRVSEGVSLELCAKDRVGLLSEVTRILREHGLTVSRAGVTTVGEQAMSVFYIREASGSPVDMTKIEEALQKEIGHTMMLNVKKDPGSTTAETDSEASHGWAKTSFFFGNLFGKSY 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1998928 2000946 - Conep20aG0042600.1 Cone20ag0412 460316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0412 456 SUPERFAMILY ACT-like 126 200 IPR045865 -
Cone20ag0412 456 ProSiteProfiles ACT domain profile. 37 116 IPR002912 -
Cone20ag0412 456 CDD ACT_ACR_3 269 343 - -
Cone20ag0412 456 ProSiteProfiles ACT domain profile. 130 216 IPR002912 -
Cone20ag0412 456 ProSiteProfiles ACT domain profile. 349 427 IPR002912 -
Cone20ag0412 456 SUPERFAMILY ACT-like 345 416 IPR045865 -
Cone20ag0412 456 CDD ACT_ACR_1 35 104 - -
Cone20ag0412 456 SUPERFAMILY ACT-like 32 105 IPR045865 -
Cone20ag0412 456 Pfam ACT domain 349 413 IPR002912 -
Cone20ag0412 456 Pfam ACT domain 37 85 IPR002912 -
Cone20ag0412 456 Pfam ACT domain 137 179 IPR002912 -
Cone20ag0412 456 Pfam ACT domain 271 334 IPR002912 -
Cone20ag0412 456 CDD ACT_ACR_2 129 202 - -
Cone20ag0412 456 Gene3D - 128 208 - -
Cone20ag0412 456 Gene3D - 344 425 - -
Cone20ag0412 456 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 15 423 IPR040217 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0412 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0412 Cone-Chr20:1998928 Cone6ag0514 Cone-Chr6:2553284 8.72E-151 dispersed
Cone4ag1777 Cone-Chr4:12976188 Cone20ag0412 Cone-Chr20:1998928 2.73E-138 transposed
Cone17ag0807 Cone-Chr17:6378764 Cone20ag0412 Cone-Chr20:1998928 4.69E-243 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1176 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag0807 Cone20ag0412 . Csa03g04320 Chy04g00380 . Blo17g00230 . . Bda13g01544 . Bpe14g00321 . Bma02g00288 . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00426
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016218 2 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 8