Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0413 ATGTACCCACTGCTAAAGCACGTTCATGGCAGCAGCATAACTCTTTTATCCCATTACTCTCACCTCATCAACCAGTGCTTATCCCTTAACTGCGTATACTTTGCCAAGACCATCCATGCTCAGTTGATTAAAAGTGGGCTTAATGGCAATACTTTTCTGGGTAATCTCTGTGTTGAATTATATGCGCAATTTGGTCCGGTTGGTAATGTTTTGAAAGTGTTTGATGAAATAAATAAGAAGAATACTATATCCTGGAATATATGCTTGAAAGGGCTTTTAAATTTCGGTCACTTCGACACTGCACGCCTACTGTTTGATGAAATGCCTGTTAGAGACGTTGTTTCCTGGAATTCCATGATTTCTGGCTTTATTTCATGCGGGTTGGACCAAAATGCTTTGGATATTTTTTCCCAGATGCAAAATAATGGTTTAAGGCCGAGTGGACACACCTATTCGATTTTGATGTCAGTTGGTAGGAGTACTCTTCATGTTAAGCAAATACATGGAAATATGTTAAGAAGTGGTATAAATTTGTCAAATTTGGTGCTTGGGAACTCATTAATTGATACGTATGGGAAGCTTGGATTTGTTGATTATGCATTTGGCGTATTCTTTACGATGAAGGATGTAGATGTTATCACTTGGAACTCTTTGATTTTGGGTTGCCATAGATCAGGCCTTGAGGAATTAGCACTAGATCAATTCCGTTCAATGAGAAGAATGGATCAATCACCTGATCATTTTACGATCTCTATAGTAATTAGTGTGTGTTGTAGCTTGCAGGATTTCAAAAAGGGTAAGCAAATCTTTGCCTTTTCCTTCAAGGTGGGGTTTCTTTCAAACAGCATTATATCAAGTGCTACTATTGACCTCTTTTCTAAATGCAACAACTTGAACGATGCTGTTAAGCTTTTTGAGGAATTAGATAAAGACCAAGATCGACCCGTTTGTAATTCCATGATTTCAAGCTATGCATTGCATGGTTTAGGGCACAATGCTCTTCGTCTTTTTGCTAGTGTCATGATGGAGAATAACCTCAATCCATGTGATGTCACACTTAGCAGTTTATTGAGCTCTGTTTCGGTTTTAATGTCTGTGGAAATGGGTATTCAAATTCATACATTGGTTGTTAAATTGGGTTTTGAGGATGATTCAATTGTTAGTAGCTCCCTCATGGACTTGTATACTAAATTCGGATTAGTTACAAATGCGATGAAAATATTTGCAGATATGGGTGTGAAAGATTTGATCTCTTGGAACACCATGATTATGGGTTTGGCTTATAACGGCAAAGAAATTGAAGCCCTACATGTTTTCATCGAACTTGTTAGGAAAGGTCTTCAAGTAGATAGGATAACTCTAAGTGGAGTTCTATTAGCTTGCAAATATGGTGGTTTTGTTAATGAAGGAATGTGGATCTTTTCATCAATGGAAAAGGTATATGGGATCAAACCCGTAAATGAGCATTATTCTTGCATGGTGGACTTGTTGAGTAGAGCTGGAAAATTAAACGAAGCAAGGGATATAATGGAAGCAATGTCATATAAACCTAACTCAGTTATTTATGAGTCATTTCTCCAAGCTTGTGTAGCTCATGGAGATTTGAAACTCACGGAAAGAGTTGCAGAGAAAGTTATGGAGTTAGTACCCGATTCATTTCTACCGTATATGGTTTTAATCCGAGCATATGAGATGAGAGGCAGATGGGAAAGTGTTGTTCGGGTTAGAAACATGATGAAACGTAAAGTTGTTAAGAAGGTTGATAAAGAGTGCAGTTGGATTGGAATACAAAACCGTGTATATACTTTCAAGGGTGATCAATTAGAACATCATGGAGGTAAAGATATTTACTTGGTCTTAAGGTTGCTTATTTGGGAAATCGAGGATGAACAATGA 1896 37.5 MYPLLKHVHGSSITLLSHYSHLINQCLSLNCVYFAKTIHAQLIKSGLNGNTFLGNLCVELYAQFGPVGNVLKVFDEINKKNTISWNICLKGLLNFGHFDTARLLFDEMPVRDVVSWNSMISGFISCGLDQNALDIFSQMQNNGLRPSGHTYSILMSVGRSTLHVKQIHGNMLRSGINLSNLVLGNSLIDTYGKLGFVDYAFGVFFTMKDVDVITWNSLILGCHRSGLEELALDQFRSMRRMDQSPDHFTISIVISVCCSLQDFKKGKQIFAFSFKVGFLSNSIISSATIDLFSKCNNLNDAVKLFEELDKDQDRPVCNSMISSYALHGLGHNALRLFASVMMENNLNPCDVTLSSLLSSVSVLMSVEMGIQIHTLVVKLGFEDDSIVSSSLMDLYTKFGLVTNAMKIFADMGVKDLISWNTMIMGLAYNGKEIEALHVFIELVRKGLQVDRITLSGVLLACKYGGFVNEGMWIFSSMEKVYGIKPVNEHYSCMVDLLSRAGKLNEARDIMEAMSYKPNSVIYESFLQACVAHGDLKLTERVAEKVMELVPDSFLPYMVLIRAYEMRGRWESVVRVRNMMKRKVVKKVDKECSWIGIQNRVYTFKGDQLEHHGGKDIYLVLRLLIWEIEDEQ 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2006919 2009309 - Conep20aG0042700.1 Cone20ag0413 460317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0413 631 Gene3D Tetratricopeptide repeat domain 55 161 IPR011990 GO:0005515(InterPro)
Cone20ag0413 631 Gene3D Tetratricopeptide repeat domain 367 463 IPR011990 GO:0005515(InterPro)
Cone20ag0413 631 NCBIfam pentatricopeptide repeat 83 113 IPR002885 -
Cone20ag0413 631 NCBIfam pentatricopeptide repeat 114 147 IPR002885 -
Cone20ag0413 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 348 IPR002885 -
Cone20ag0413 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Cone20ag0413 631 FunFam Pentatricopeptide repeat-containing protein At3g49710 24 165 - -
Cone20ag0413 631 Pfam PPR repeat family 111 156 IPR002885 -
Cone20ag0413 631 Pfam PPR repeat family 211 258 IPR002885 -
Cone20ag0413 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Cone20ag0413 631 Pfam PPR repeat 317 338 IPR002885 -
Cone20ag0413 631 Pfam PPR repeat 556 582 IPR002885 -
Cone20ag0413 631 Pfam PPR repeat 185 209 IPR002885 -
Cone20ag0413 631 Pfam PPR repeat 417 447 IPR002885 -
Cone20ag0413 631 Pfam PPR repeat 289 310 IPR002885 -
Cone20ag0413 631 Pfam PPR repeat 389 412 IPR002885 -
Cone20ag0413 631 Pfam PPR repeat 489 513 IPR002885 -
Cone20ag0413 631 Gene3D Tetratricopeptide repeat domain 464 609 IPR011990 GO:0005515(InterPro)
Cone20ag0413 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 112 146 IPR002885 -
Cone20ag0413 631 Gene3D Tetratricopeptide repeat domain 229 366 IPR011990 GO:0005515(InterPro)
Cone20ag0413 631 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 239 340 - -
Cone20ag0413 631 FunFam Pentatricopeptide repeat-containing protein At2g34400 373 621 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0413 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0413 Cone-Chr20:2006919 Cone17ag1161 Cone-Chr17:8564252 9.50E-98 dispersed
Cone20ag0413 Cone-Chr20:2006919 Cone4ag1444 Cone-Chr4:11466972 6.93E-60 wgd
Cone20ag0413 Cone-Chr20:2006919 Cone7ag1490 Cone-Chr7:10440490 1.06E-33 wgd
Cone20ag0413 Cone-Chr20:2006919 Cone9ag1227 Cone-Chr9:8943128 6.95E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1173 . . . . . . . . Cmo04g02524 . . . . . . . . Bhi04g01837 . . . Hepe02g2102 . Lcy10g1297 . . . . . . . . . . Cone20ag0413 . . . . . . . . . . Bma01g00880 . . . . . . Car04g02324 . . . . . . . . . . . . . . . . . Lsi08g00508 . . .