Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0414 ATGGCTACTAATGCAGCAGCGGCCTTTGCAGAGAGGGCAACAAGTGATATGCTGATTGGTCCAGATTGGGCGATAAATATCGAGCTATGTGATATTATTAACATGGAACCTGCGCAAGCAAAGGATGCATTGAAGATACTCAAGAAGCGTCTCGGAAGCAAGACCCCTAAAATACAAATTCTGGCTCTTTTTGCATTGGAGACTCTGAGCAAAAACTGTGGGGAGACTGTTTTTCAGCAAATTGTAGAGCGTGACATCTTACATGATATGGTTAAAATAGTAAAGAAAAAGCCGGACTTCCACGTGAAGGAAAAAATATTGTCGCTGATAGATTCATGGCAAGAAGCTTTTGGAGGACCGGGGGGAAGATATCCCCAATACTATACAGCCTACACTGAATTGAAGAATGCTGGAGTTGAATTTCCTCCTCGGGAAGAGAATAATGTACCATTTTTCACTCCACCCCAAACTCAGCCAGTTGTTCACCTTCCTGATTCAACTTATGAAGATGCTGCTATTCAGGCTTCCCTTCAGACTGATACTTCAAGCCTTAGCTTGCCAGAAATTCAAAGCGCACAAGGACTAGCAGATGTGCTAATGGAAATGCTCAATGCATTGGATCCCAAGAAACCAGAGGGTATCAAGCAAGAATTGATAATCGACCTAGTTGACCAGTGCCGTTCATACCAAACACGTGTAATGCTCCTTATCAACAATACCTCAGATGAAGAACTCTTGGGTCAGGGATTGGCCTTGAATGATAGCCTACAACGAGTTCTTCGCCGCCATGATGACATTGCATTTGGGGCCTCAACTACCCCAGTAAGAGGATCTGAATCTTTTGGTATGCCCATTGTGAATGTCAATCATGAGGATGATGAGTCTGAAGATGACTTTGCTCAGCTAGCTCATAGGTCCTCAAGAGATAATTTACATGGGCAGGGCAGGAAAGCATCAAATGGCAACAGCGAACCACTTCGGCTGAACCCTCCACCTTCGTCAAAGAAGCCAGTCAACTCCGAGGCTTCCATGGTTGACTACTTAAGTGGAGATGTCTACAAGTCCAATATCCCACCTCATTCCGAAAAACCAGCCCCACCACCTTTGACGTCAACTCTATCTTCTTCCCCACCTTCTTCCCAGGAAGTGAACCCCACATCATCACTCTTATTCACAGGCCAACCTGGATACGATGAACCGGCCCCACTGAGAAGATCTACTGATCCACTCCCTCCTGCTCCTTGGGAAGCTCAGTCACCTCCTACCTCTCTCCCTCCACCACCTTCTAGATACAATCAAAGACAGCAGTTTTTCGACCAACAGACTTTTCCAGGAAGTTCTTCGAGCAGTAGTGGGGCTGGCTCGTCATATGACAGCTTAGTGGGCCAGGCTCGGAATCTTTCGCTTAATAATCCCACCACTTCTTCTTCCCCTACCAAAGAGGGAAAACCAGAAGACGTGCTTTTTAAAGATCTGGTTGATTTTGCAAAAGCCAAGTCTTCTTCTTCCTCGAAACCCAATAGATCGTTTTGA 1533 45.66 MATNAAAAFAERATSDMLIGPDWAINIELCDIINMEPAQAKDALKILKKRLGSKTPKIQILALFALETLSKNCGETVFQQIVERDILHDMVKIVKKKPDFHVKEKILSLIDSWQEAFGGPGGRYPQYYTAYTELKNAGVEFPPREENNVPFFTPPQTQPVVHLPDSTYEDAAIQASLQTDTSSLSLPEIQSAQGLADVLMEMLNALDPKKPEGIKQELIIDLVDQCRSYQTRVMLLINNTSDEELLGQGLALNDSLQRVLRRHDDIAFGASTTPVRGSESFGMPIVNVNHEDDESEDDFAQLAHRSSRDNLHGQGRKASNGNSEPLRLNPPPSSKKPVNSEASMVDYLSGDVYKSNIPPHSEKPAPPPLTSTLSSSPPSSQEVNPTSSLLFTGQPGYDEPAPLRRSTDPLPPAPWEAQSPPTSLPPPPSRYNQRQQFFDQQTFPGSSSSSSGAGSSYDSLVGQARNLSLNNPTTSSSPTKEGKPEDVLFKDLVDFAKAKSSSSSKPNRSF 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2012290 2017329 + Conep20aG0042800.1 Cone20ag0414 460318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0414 510 CDD VHS 14 136 - -
Cone20ag0414 510 PIRSF TOM1 1 510 IPR014645 -
Cone20ag0414 510 ProSiteProfiles VHS domain profile. 13 142 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cone20ag0414 510 FunFam TOM1-like protein 2 5 152 - -
Cone20ag0414 510 Gene3D - 177 273 IPR038425 -
Cone20ag0414 510 SUPERFAMILY ENTH/VHS domain 9 143 IPR008942 -
Cone20ag0414 510 MobiDBLite consensus disorder prediction 313 340 - -
Cone20ag0414 510 MobiDBLite consensus disorder prediction 306 486 - -
Cone20ag0414 510 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091(InterPro)|GO:0043130(InterPro)
Cone20ag0414 510 Pfam GAT domain 196 266 IPR004152 GO:0035091(InterPro)|GO:0043130(InterPro)
Cone20ag0414 510 CDD GAT_GGA-like_plant 188 266 - -
Cone20ag0414 510 MobiDBLite consensus disorder prediction 429 481 - -
Cone20ag0414 510 SUPERFAMILY GAT-like domain 146 267 - -
Cone20ag0414 510 Gene3D - 1 159 IPR008942 -
Cone20ag0414 510 MobiDBLite consensus disorder prediction 405 428 - -
Cone20ag0414 510 MobiDBLite consensus disorder prediction 374 393 - -
Cone20ag0414 510 Pfam VHS domain 11 117 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cone20ag0414 510 PANTHER TOM1-LIKE PROTEIN 6 507 IPR044836 GO:0035091(InterPro)|GO:0043130(InterPro)|GO:0043328(InterPro)
Cone20ag0414 510 SMART VHS_2 6 138 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0414 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1114 Cone-Chr17:8266401 Cone20ag0414 Cone-Chr20:2012290 2.06E-101 dispersed
Cone20ag0414 Cone-Chr20:2012290 Cone4ag1233 Cone-Chr4:10260541 1.95E-105 dispersed
Cone17ag0809 Cone-Chr17:6396646 Cone20ag0414 Cone-Chr20:2012290 1.51E-307 wgd
Cone20ag0414 Cone-Chr20:2012290 Cone4ag1441 Cone-Chr4:11443508 2.57E-151 wgd
Cone20ag0414 Cone-Chr20:2012290 Cone7ag1494 Cone-Chr7:10458333 3.70E-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g185 Blo01g01314 Blo12g01115 Bda01g00684 . Bpe02g00621 Bpe04g00015 Bma04g00022 Bma01g02098 . Cmo15g00650 . . . . . . . Bhi04g01843 Tan11g1214 . . . . . Cla08g00646 Cam08g1070 Cec08g0655 Cco08g0766 Clacu08g0775 . Cre08g0583 Cone4ag1441 . Cone17ag0809 Cone20ag0414 . Csa04g01732 . Cme03g00439 . . . . . . . . . . . . . Car04g02322 Car15g00588 Cpe01g02087 Cpe02g00872 . . . . . . . . . . . . . . Lsi08g00505 . Chy03g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001242 1 5 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 4 4 2 2 2 1 2 2 3 2 5 3 1 76