Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0415 ATGGGTGTCGGTGCAAACTCCATACTCAACCTTGTTCTTCACCTGAAAGTTCTCAAACCTAAATCCCAACATCCTAGCATCAATGCGGTAACCAGGGATATCCTTAATTACGTCAAAGTTGGTCGGCTTCAGAAAGCTGTCTCTATCCTCTTTACCTCCCCATTTCCTTTCCCTTATCCTCTCTATGCGCGACTCTTCCAAATCTGTTCTTCTAACCATGCCATTGTTGAGGCGCGGAAGCTCGAATCGCATTTGGTTACGTTTTCTCCAACCCCACCAATTTTTCTCTTGAATCGTGCTATTGAAGCATATGGGAAATGTGGATGTTTGGCTGATGCACGTGAACTGTTTGAGGAAATGCCCAAGAGGAATGGCGGGTCGTGGAATGCAATGGTAACAGCTTGTTCGCAAAATGGGTATGCTGATGAGGCAGTGAGCTTGTTCTTAAAGATGAATAAGTCAAGTGTTCAAGCTAATGAGATTACATTTGCTGGTGTTCTTGGCTCTTGTGCGTCATTATTGGCTCTTCATTTCTCAAGGCAAGTTCATGGTCAAATTGTGAAATTTGGTTTTGTCGGGAATGTGATTTTGGAGAGTTCACTTGTCGATGTCTATGGAAAATGTAAGGTTATCAATGATGCTCGTAGTATGTTTGATGAGATCAAGAAACCAAATGATATTTCTTGGAATGTGATTGTTAGGAGGTATCTTGAGATGGGCGATGAGAAAGAGGCAGTGTCTATGTTTTTCAAAATGTTCCAAGAAGCTATGAGACCATTGAATTTTACATTTTCAAATGCTCTAAATGCTTGTTCGAGTATATGTGCTCTTAAGGAGGGTATGCAAATTCATGCAGTAGCTATTAAACTATATTTTGACGATGATGAGTTTGTCTCAAGTTCTCTCATTGATATGTATGTCAAGTGTGGACATCTAGAAAATGCCCGTCAAGTATTTGACCAACCCAATTCAAGGAATCTGATTTCTTCCACTTCAATGGTATCTGGGTATGCAATGTGTGGGAAAATCCATCAAGCTAGGAAGCTTTTCGATGAAATGCCAGAAAGGAATGTGATATCATGGAATGCAATGTTGGCTGGATATACCAGTTCCTTTCAATGGGAAGAGGCCTTCAATTTTTTACTTTTGATGCGTAAAACAATTAAAGATATTGACCATGTGACTCTTGGATTGATCTTTAATGTCTGTTCTGGCCTTTCTGACCTTGAAATGGGGAAACAGGTTCATGGGTTTGTATACCGACATGGGTTTTACGATAATCTAAATATCGGAAACGCCCTTCTTGACATGTACGGAAAATGTGGGAGCTTAAGAAGTGCTAGAGTTTGGTTTTACCAAATAAACCAAAGGCGAGATAATGTCTCTTGGAACGCTCTTCTCACTAGCTATGCTCGTCATGGTATGAGCGAACAAGCTATGATGATGTTCTCCGAGATGCAATGGGAGACAAGGGCTAACAAATTTACCTTTTCGACCCTCCTTGCTGCTTGTGCAAATACTTTTGCTCTCGCTTTGGGAAAACAAATCCATGGGTTTATGATTAGAAATGGTTATGATATAGATATTGTGGTCCAAGGAGCTTTAGTTGACATGTACTCTAAATGTCGTTGTATCAAATATTCTCTCAATGTTTTCAAAGAAGCTGCTTTGCGAGATTTGATTCTTTGGAATTCTATTATTTTTGGATGCTGCCACAATCAAATGGGTAAGGAGGTGATTGAACTGTTTTCATTAATGGTAGAGGAAGGTACTAAGCCAGACCATGTTACCTTTCAAGGTATCCTTCAAGCTTGTGTTAATGAAAACCTTGCTCAATTGGGTGGGAAGTATTTTAACTCAATGAGTGATAGGTTCTACATTATACCTCGAATCGAGCACTATGATTGCATGATTGAACTTTATAGCCGGCACGGCCACATAAACGAGCTTGAGAGGTTTGTTAAGTCTATGCCATTTGATCCCACTGTTCCAATGCTGGAGAAGGTTTTCAATGCTTGTATGAAATATGGATACTCTAGGTTAGGAGAATGGGCTGCTTTACAAATTAATAAGCATGATACCCAATGTTAA 2091 39.89 MGVGANSILNLVLHLKVLKPKSQHPSINAVTRDILNYVKVGRLQKAVSILFTSPFPFPYPLYARLFQICSSNHAIVEARKLESHLVTFSPTPPIFLLNRAIEAYGKCGCLADARELFEEMPKRNGGSWNAMVTACSQNGYADEAVSLFLKMNKSSVQANEITFAGVLGSCASLLALHFSRQVHGQIVKFGFVGNVILESSLVDVYGKCKVINDARSMFDEIKKPNDISWNVIVRRYLEMGDEKEAVSMFFKMFQEAMRPLNFTFSNALNACSSICALKEGMQIHAVAIKLYFDDDEFVSSSLIDMYVKCGHLENARQVFDQPNSRNLISSTSMVSGYAMCGKIHQARKLFDEMPERNVISWNAMLAGYTSSFQWEEAFNFLLLMRKTIKDIDHVTLGLIFNVCSGLSDLEMGKQVHGFVYRHGFYDNLNIGNALLDMYGKCGSLRSARVWFYQINQRRDNVSWNALLTSYARHGMSEQAMMMFSEMQWETRANKFTFSTLLAACANTFALALGKQIHGFMIRNGYDIDIVVQGALVDMYSKCRCIKYSLNVFKEAALRDLILWNSIIFGCCHNQMGKEVIELFSLMVEEGTKPDHVTFQGILQACVNENLAQLGGKYFNSMSDRFYIIPRIEHYDCMIELYSRHGHINELERFVKSMPFDPTVPMLEKVFNACMKYGYSRLGEWAALQINKHDTQC 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2017608 2020503 + Conep20aG0042900.1 Cone20ag0415 460319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0415 696 Pfam PPR repeat family 127 171 IPR002885 -
Cone20ag0415 696 Pfam PPR repeat family 559 607 IPR002885 -
Cone20ag0415 696 Pfam PPR repeat family 459 506 IPR002885 -
Cone20ag0415 696 NCBIfam pentatricopeptide repeat 562 594 IPR002885 -
Cone20ag0415 696 NCBIfam pentatricopeptide repeat 461 487 IPR002885 -
Cone20ag0415 696 NCBIfam pentatricopeptide repeat 331 358 IPR002885 -
Cone20ag0415 696 NCBIfam pentatricopeptide repeat 127 159 IPR002885 -
Cone20ag0415 696 Gene3D Tetratricopeptide repeat domain 28 174 IPR011990 GO:0005515(InterPro)
Cone20ag0415 696 Gene3D Tetratricopeptide repeat domain 614 695 IPR011990 GO:0005515(InterPro)
Cone20ag0415 696 Gene3D Tetratricopeptide repeat domain 411 509 IPR011990 GO:0005515(InterPro)
Cone20ag0415 696 Gene3D Tetratricopeptide repeat domain 283 410 IPR011990 GO:0005515(InterPro)
Cone20ag0415 696 Gene3D Tetratricopeptide repeat domain 510 613 IPR011990 GO:0005515(InterPro)
Cone20ag0415 696 Gene3D Tetratricopeptide repeat domain 175 282 IPR011990 GO:0005515(InterPro)
Cone20ag0415 696 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Cone20ag0415 696 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 478 690 IPR050421 GO:0009507(PANTHER)|GO:1900865(PANTHER)
Cone20ag0415 696 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 559 593 IPR002885 -
Cone20ag0415 696 FunFam Pentatricopeptide repeat-containing protein 409 511 - -
Cone20ag0415 696 FunFam Pentatricopeptide repeat-containing protein At3g26540 175 276 - -
Cone20ag0415 696 SUPERFAMILY TPR-like 194 353 IPR011990 GO:0005515(InterPro)
Cone20ag0415 696 FunFam pentatricopeptide repeat-containing protein At2g33680 532 695 - -
Cone20ag0415 696 Pfam PPR repeat 300 320 IPR002885 -
Cone20ag0415 696 Pfam PPR repeat 227 253 IPR002885 -
Cone20ag0415 696 Pfam PPR repeat 100 124 IPR002885 -
Cone20ag0415 696 Pfam PPR repeat 330 358 IPR002885 -
Cone20ag0415 696 Pfam PPR repeat 199 223 IPR002885 -
Cone20ag0415 696 Pfam PPR repeat 359 386 IPR002885 -
Cone20ag0415 696 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Cone20ag0415 696 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 489 IPR002885 -
Cone20ag0415 696 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0415 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0415 Cone-Chr20:2017608 Cone19ag0653 Cone-Chr19:5569211 1.03E-95 dispersed
Cone20ag0415 Cone-Chr20:2017608 Cone5ag0157 Cone-Chr5:661312 4.55E-101 transposed
Cone20ag0415 Cone-Chr20:2017608 Cone7ag0729 Cone-Chr7:4415865 4.45E-99 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1171 . . . . . . . . . . . . . . . Cpe06g00053 Cpe13g00653 Bhi04g00088 . . . . . . . . . . . . . . . . Cone20ag0415 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012345 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 2 1 1 1 1 1 1 1 1 2 0 1 1 1 1 29