Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0418 ATGATCGTCGGGAAAGGAATAATCAATGGAGACGGTGAATCAGTGAATAATTGTCTTGGAATGGAAGCTTGTAATGACGATGTTGCCCAAGGGAGCTCGACGGCTGGAAAATTTTTTCTAACATACCGACGGCGGAAGAAGGTAAATAGTTGTCTTGGGATAGCAGCTTGCAATAACGATGTTGCCCAAACGAGCTCGAGGGCTAGAGGCATTTTTCGAACATATCGACGGCGGGAGAAGCTGAAAAACTGTCTTGGGATGGCAGTTTGCAATCAGGGGAGCTTGAGGTATATAAACACTTTTCAAACTTACCAGCGGCGGAAGAAGCTGAAGTGCAGCTCCAGAAGTAGAAGTCAGGAAGATGGCAGAGACTATGTTGAAGCTGAGTGCCAAGGAACTAAACAGAAATATGATTGTCAGGATGAAGATGGCTATGGGGACAATTCCGACAGAAGAACAATGTCAAATGAAACACATAAGGAATCTTATCTTATTGAAGTGGGTGTGACATCTAATGGATACTTGGAAAATTCAAATCATTATACTGTTATTGAGAATGTTCGAAGTGCTTTATCGAATATTCTATCTTCACAAAGTTTCACTTCACTATGTCATCTTTTCCTTGAAAATTTCCAAGGAGTCAAAGCTGATAGCCTTTTTGACTTTAGCCTCATAAACTCAAGGTTGAAAGATGGGGCTTATGAAAATTCACCTACCCTCTTCTCTTCAGATATGCAACAGATATGGAGAAAGTTTCAAGTGATTGGTACGGAATTGACTTCGCTAGCAGAGGACCTTTCAGCCATTTCTGTGGCCTCTTATCATGAACAGGTAGCAGTTTCAGTTTGCAACACATTCAAAGATGGGAAGAATGAGTTCCATGTTTCAGAATCCGACTCCCTTACTAATGAAGCAGAGCAAACTACGGCCGATAATGTATACAACAACTGTACTTGTAGAAACTGTGGTGAAAAGGCAGATGGAAGAGATTATTTAGTATGTGATTCATGCGAGCAAATGTATCATCTATCCTGCATTGAACCCTTTGTCAAAGAGGTTCCCTTTGCAACCTGGTTTTGTGCCATTTGCACCGAAAAAAGTGGAATTGGATCACCCCATGAAAATTGTATAGTCTGTGAGAAGCTGAACAGCTCAAGGACTCTGTCTAATGGAACTGTAAAACAAAATCTGCCTCCAAATGAAGAGATGCTTTTTCAAGTGGAGAAAGAAACTTCAAACTCTATTCCGGGCAATGGGCTCGAAGGTTTCAAAGAAAACAAAACCTTATTCCCTTGCAAAATCTGTGGACATGATTTAGCTTCTGAAAGTTTCAAGATATGTACCCATGCGTTGTGTCCAAGTAAATTCTACCATGCAAGGTGCTTGACAATCAACCAGTTGGAAAACTATGGTTCAAGGTGGTACTGCCCTTCTTGCCTTTGCAGAGTCTGCCTTTCTGATAGGGATAGTGACAAGATTGTTCTTTGCAGTAGATGTGATCATGGATATCACGTTTATTGCACGGAACCGCCAAGATCATCAATTCCAATGGGAAAATGGTTGTGTCGAAAATGTGATTCAGAGAGTCAGAGACTACGCAGGTTGAAAAGGTTATATGAGAACTTGGAAATTAAACGCTAA 1641 41.01 MIVGKGIINGDGESVNNCLGMEACNDDVAQGSSTAGKFFLTYRRRKKVNSCLGIAACNNDVAQTSSRARGIFRTYRRREKLKNCLGMAVCNQGSLRYINTFQTYQRRKKLKCSSRSRSQEDGRDYVEAECQGTKQKYDCQDEDGYGDNSDRRTMSNETHKESYLIEVGVTSNGYLENSNHYTVIENVRSALSNILSSQSFTSLCHLFLENFQGVKADSLFDFSLINSRLKDGAYENSPTLFSSDMQQIWRKFQVIGTELTSLAEDLSAISVASYHEQVAVSVCNTFKDGKNEFHVSESDSLTNEAEQTTADNVYNNCTCRNCGEKADGRDYLVCDSCEQMYHLSCIEPFVKEVPFATWFCAICTEKSGIGSPHENCIVCEKLNSSRTLSNGTVKQNLPPNEEMLFQVEKETSNSIPGNGLEGFKENKTLFPCKICGHDLASESFKICTHALCPSKFYHARCLTINQLENYGSRWYCPSCLCRVCLSDRDSDKIVLCSRCDHGYHVYCTEPPRSSIPMGKWLCRKCDSESQRLRRLKRLYENLEIKR 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2042396 2045838 - Conep20aG0043200.1 Cone20ag0418 460322

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0418 546 ProSitePatterns Zinc finger PHD-type signature. 476 525 IPR019786 -
Cone20ag0418 546 Coils Coil 525 545 - -
Cone20ag0418 546 Gene3D - 241 367 - -
Cone20ag0418 546 ProSiteProfiles Zinc finger PHD-type profile. 478 528 IPR019787 -
Cone20ag0418 546 PANTHER OS02G0192300 PROTEIN 220 365 - -
Cone20ag0418 546 SUPERFAMILY FYVE/PHD zinc finger 418 480 IPR011011 -
Cone20ag0418 546 Pfam PHD-finger 481 525 IPR019787 -
Cone20ag0418 546 Pfam PHD-finger 319 363 IPR019787 -
Cone20ag0418 546 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 424 532 IPR013083 -
Cone20ag0418 546 ProSiteProfiles Zinc finger PHD-type profile. 316 366 IPR019787 -
Cone20ag0418 546 SUPERFAMILY FYVE/PHD zinc finger 480 534 IPR011011 -
Cone20ag0418 546 SMART PHD_3 481 526 IPR001965 -
Cone20ag0418 546 SMART PHD_3 431 480 IPR001965 -
Cone20ag0418 546 SMART PHD_3 318 364 IPR001965 -
Cone20ag0418 546 SUPERFAMILY FYVE/PHD zinc finger 311 365 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0418 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0030 Cone-Chr12:223367 Cone20ag0418 Cone-Chr20:2042396 8.67E-09 dispersed
Cone18ag1282 Cone-Chr18:8976476 Cone20ag0418 Cone-Chr20:2042396 2.50E-08 dispersed
Cone20ag0418 Cone-Chr20:2042396 Cone8ag0032 Cone-Chr8:202147 2.15E-08 dispersed
Cone20ag0418 Cone-Chr20:2042396 Cone4ag1438 Cone-Chr4:11418715 2.04E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g202 Blo01g01312 . Bda01g00681 . Bpe02g00624 . . Bma01g02095 . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1438 . . Cone20ag0418 . . . . . . . . . . . . . . . . . . . . Cpe02g00868 Bhi09g01871 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007161 1 1 1 1 1 1 2 0 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45588 None None None None Cone TR