Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0419 ATGGTACAGCCGCCGTACCGTTGCATTTCGTCGCCGGAATCAGACGACGGTTCCGAATCCGATTCCGATAGCGACACGATGAGGTGCGTATCGTGCTCGGAGGAATACGAGCCACGTGACGCCGGCACGTGCAAGGCGTGCTACAAGGAGGCCAACGAGACTGAAGAAGAGCTCAAGCGCGAGATCGAAGATTTGAAGGCTAAAGTCGCTTTCCTCAGCTTCTGGTCTTCTCTCGATCCCCACCATAATCGGTCTAACGCTCTCTGTTTCACCGACGTCGTTTTGGTTGCATCCGATTCCGCGTTGGCTGGACCCTCCGTCCCTGTTCCGGCCCATAAATCTGTTCTGGCAAATCGTTCTCCAGTATTCAGAGCAATGCTCGAGAACGAAATGGAAGAAAGCCTAAGCGGGACCATTAAAATCTCCGAGGTTTCCTATGACGCCCTTAGAGCCTTTGTTAGCTACCTATACACTGCAGAAGCATGTCTTGATGAACAGATGGCCTTTGACCTACTAATATTAGGTGAAAAGTACGAGATCAAGCATCTAAAGAACTATTGTGAGAAGTTCCTGGTCTCGAAACTGAACTGGGATAATTCCGTAACGAGTTATGCCTTTGCTCATCAGCACAATGCTAAGCATATGCTTGAAGCGGCTTTGTCTTGGATTATGGAAAATATGGATAAGCTTACTAAAAGGGAAGAGTATATAGAGCTTGTGGAGAAGGATCCTAGATTGGTTGTGGAGATTTACGAGGCTTATCTTTCGAATCAGGTTAATACTGCTGCCCTGAAGGATTCTTCTGCGAAATCGTAG 816 47.92 MVQPPYRCISSPESDDGSESDSDSDTMRCVSCSEEYEPRDAGTCKACYKEANETEEELKREIEDLKAKVAFLSFWSSLDPHHNRSNALCFTDVVLVASDSALAGPSVPVPAHKSVLANRSPVFRAMLENEMEESLSGTIKISEVSYDALRAFVSYLYTAEACLDEQMAFDLLILGEKYEIKHLKNYCEKFLVSKLNWDNSVTSYAFAHQHNAKHMLEAALSWIMENMDKLTKREEYIELVEKDPRLVVEIYEAYLSNQVNTAALKDSSAKS 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2047439 2048927 + Conep20aG0043300.1 Cone20ag0419 460323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0419 271 CDD BTB_POZ_ZBTB_KLHL-like 90 178 - -
Cone20ag0419 271 SUPERFAMILY POZ domain 89 193 IPR011333 -
Cone20ag0419 271 MobiDBLite consensus disorder prediction 1 27 - -
Cone20ag0419 271 Coils Coil 44 68 - -
Cone20ag0419 271 Pfam BTB/POZ domain 89 194 IPR000210 GO:0005515(InterPro)
Cone20ag0419 271 Gene3D - 196 270 - -
Cone20ag0419 271 Gene3D Potassium Channel Kv1.1; Chain A 77 195 IPR011333 -
Cone20ag0419 271 PANTHER SPECKLE-TYPE POZ PROTEIN 90 264 - GO:0005737(PANTHER)|GO:0030162(PANTHER)|GO:0031625(PANTHER)|GO:0043161(PANTHER)
Cone20ag0419 271 FunFam BTB/POZ domain-containing protein 197 270 - -
Cone20ag0419 271 CDD BACK 198 250 - -
Cone20ag0419 271 ProSiteProfiles BTB domain profile. 91 165 IPR000210 GO:0005515(InterPro)
Cone20ag0419 271 SMART BTB_4 91 195 IPR000210 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0419 K10523 - - csv:101206278 397.512
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0814 Cone-Chr17:6491411 Cone20ag0419 Cone-Chr20:2047439 1.16E-163 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g203 Blo01g01311 . Bda01g00680 . Bpe02g00625 . . Bma01g02094 . . Cma01g01033 . Car01g00908 . . . . . . . . . . . . . . . . . . . . Cone17ag0814 Cone20ag0419 . . . . . . . . . . . . . Cmo01g01072 . . . . . . Cpe02g00858 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008496 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 0 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45589 PF12697 Abhydrolase_6 1.40E-13 CL0028 Cone TR