Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0422 ATGAAGTTACTACATAACGGAGTCGCCGGGGAACCAGAACCATCCGGGTCCGGAGGCCGGACAGTCGTGGTGGGAATGAAACTCGACTCGCAGAGTAGAGAGCTGCTCACTTGGGCTCTGGTCAAAGTAGCTCAGCCAGGTGACCTTGTTATTGCTCTTCATGTTCTCGCCAACGACGAAATTGTGAATAAAGATGGAAAATCTTCCCTTCTGTCTCTTGTCAAAGCGTTCGATCCTGTTCTAGCTGTCTATGAAGGTTTCTGCAACTTAAAACAGGTGGATTTGAAGCTAAAGATCTGCAGAGGTACATCAGCTCGGAAAATAATAGTCCGAGAAGCAGAGTCTTATTCAGCGACAAATGTTATTGTAGGAACTGCTCATAACCACCATAAATTGAGGCCATTGACCTCTGTTGCTAAGTACTGTGCCAAAAAACTACCCAAGGATTGTTGGGTTCTTGCTATAAACAATGGAAAAATTGTTTTCAAGAGGGAGGGCTCTCCTTCATCCATTGCTTGCTCTCAAGGAAGCGAAGCAGAGCGTGCAAATGGTCTACTTGGTGCATTTAACAGATCTGTTAGTAAAACTTCAAAAGGATCAAACTTGAGTACTAATCAAATTCATATGGGTTTTTCAAAATCCAAGTTGGATGATAGTGATAGCATGGTGAAACCAAGCTGCTTGATCTGTGCAAAGCCGAGAAATGCTAATGAGGAATCTAGAGAAGAAGAATCTTCGAATGATGATGATAAGAATCGCAATTCTCTAGCTATGGTACCAGTAGAGAAAGTAGAAACAGGATCAAGCTCTATCACTATGTTAATAAAAAAATTACCCGAAACAAGACCTGGCTGGCCGCTGCTTAGACGAACCGTTAGATCAGACCAACAAGGTTCAGATCGATCAATCTCTGTAGTTGAGTGGGCCATGAGGTTACCTTGTAGGTCTAATAGTACTCAAAGCACCACTTTGAATAATCATGATCAATTTTCTTCTAATCTAGATGGAGAAAATGGCGCAATTGTTCCAGTTGATTCTGATTATGCAGTCTCTACCCCTTCTCCTGTTCACAAATCAAGCTTACCAAAAGAATTAGAGGGTCTTCATGAGAAGTACTTATCCACTTGTAGATTGTTCAACTACCAAGAACTCCTCTCAGCTACCTCAAATTTCTTAGCCGAGAATTTGGTTGGGAGAGGAGGAAGCAGTCAAGTATACAGAGGCTGTCTTCCAGATGGTAGGAAACTTGCAGTGAAGATATTGAAACCATCTGAAGATGTTTTGAAGGAGTTTGTTTTGGAGATTGAGATTATTACAGCCTTAAATCACAAGAACATTGTCTCCCTTCTCGGTTTCTGTTTTGAGGACAACAAATTCTTATTGGTTTATGATTTCTTATCCAGAGGAAGTCTTGAAGAGAACCTTCATGGTAATAAGAAGGACCCACTTGCATTTGGTTGGAATGAAAGATATAAAGTGGCTCTTGGTGTAGCTGAGGCCTTAGATTATCTTCATAGTGACAGTTATCGACGCGTTATTCATAGAGATGTTAAATCTTCAAATATTTTGTTGTCCAATGATTTTGAGCCTCAGCTTTCGGACTTTGGACTTGCAAAATGGGCATCAACCTCATCGTCTCATATAACCTGCACTGACGTTGCAGGGACATTCGGCTACTTGGCTCCGGAATATTTCATGTATGGAAAAGTAAATGACAAGATTGATGTCTATGCATTTGGGGTAGTACTCCTTGAACTTCTTTCAGGACGAAAACCGATAAGCTCGGATTCTCCGAAAGGCCGAGAGAGCTTAGTTATGTGGGCAAAACCGATTCTAGATGGTGGGAAGGTTTCTGAATTGTTGGACCCGAGCTTAGGTGATAATTACAATCAGGCCCAAATAGAGAGGATGGTTTTAGCGGCCAGTCTATGCATCCAACGTTCCCCCAGAGCTAGACCTCAAATGAGCCTTGCTCTGAAGCTCCTAAAAGGGGATCCAAACGTTACCATGTTGGCCCGGCTACAACTTAACACCATGGACGATTCAGAGATGGTAGATGGTGAAACATGTCCACGTTCTCATCTCCAGTCACATCTCAACCTTGCATTACTTGATGTGGAGGATGACTCGATCTCCGTGAGCAGCGTTGAGCAAACTGTCTCAATCAAGGAATACTTACAAGGCCGGTGCAGCCGATCTTCGAGTTTCGACTAA 2214 42.64 MKLLHNGVAGEPEPSGSGGRTVVVGMKLDSQSRELLTWALVKVAQPGDLVIALHVLANDEIVNKDGKSSLLSLVKAFDPVLAVYEGFCNLKQVDLKLKICRGTSARKIIVREAESYSATNVIVGTAHNHHKLRPLTSVAKYCAKKLPKDCWVLAINNGKIVFKREGSPSSIACSQGSEAERANGLLGAFNRSVSKTSKGSNLSTNQIHMGFSKSKLDDSDSMVKPSCLICAKPRNANEESREEESSNDDDKNRNSLAMVPVEKVETGSSSITMLIKKLPETRPGWPLLRRTVRSDQQGSDRSISVVEWAMRLPCRSNSTQSTTLNNHDQFSSNLDGENGAIVPVDSDYAVSTPSPVHKSSLPKELEGLHEKYLSTCRLFNYQELLSATSNFLAENLVGRGGSSQVYRGCLPDGRKLAVKILKPSEDVLKEFVLEIEIITALNHKNIVSLLGFCFEDNKFLLVYDFLSRGSLEENLHGNKKDPLAFGWNERYKVALGVAEALDYLHSDSYRRVIHRDVKSSNILLSNDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISSDSPKGRESLVMWAKPILDGGKVSELLDPSLGDNYNQAQIERMVLAASLCIQRSPRARPQMSLALKLLKGDPNVTMLARLQLNTMDDSEMVDGETCPRSHLQSHLNLALLDVEDDSISVSSVEQTVSIKEYLQGRCSRSSSFD 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2066692 2070412 - Conep20aG0043600.1 Cone20ag0422 460326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0422 737 ProSitePatterns Serine/Threonine protein kinases active-site signature. 512 524 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0422 737 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 20 152 - -
Cone20ag0422 737 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 360 465 - -
Cone20ag0422 737 ProSiteProfiles Protein kinase domain profile. 391 668 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0422 737 ProSitePatterns Protein kinases ATP-binding region signature. 397 419 IPR017441 GO:0005524(InterPro)
Cone20ag0422 737 MobiDBLite consensus disorder prediction 235 251 - -
Cone20ag0422 737 MobiDBLite consensus disorder prediction 1 21 - -
Cone20ag0422 737 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 19 156 - -
Cone20ag0422 737 SMART serkin_6 391 668 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0422 737 CDD STKc_IRAK 397 664 - -
Cone20ag0422 737 MobiDBLite consensus disorder prediction 234 257 - -
Cone20ag0422 737 PANTHER OS08G0249100 PROTEIN 75 705 IPR046958 -
Cone20ag0422 737 FunFam Putative receptor-like serine/threonine-protein kinase 466 678 - -
Cone20ag0422 737 Pfam Universal stress protein family 20 152 IPR006016 -
Cone20ag0422 737 Pfam Protein kinase domain 394 600 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0422 737 SUPERFAMILY Protein kinase-like (PK-like) 372 671 IPR011009 -
Cone20ag0422 737 Gene3D Phosphorylase Kinase; domain 1 357 465 - -
Cone20ag0422 737 CDD USP_Like 21 152 - -
Cone20ag0422 737 Gene3D HUPs 19 156 IPR014729 -
Cone20ag0422 737 Gene3D Transferase(Phosphotransferase) domain 1 466 674 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0422 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0286 Cone-Chr11:1394159 Cone20ag0422 Cone-Chr20:2066692 8.59E-78 dispersed
Cone18ag1204 Cone-Chr18:8583931 Cone20ag0422 Cone-Chr20:2066692 1.07E-78 dispersed
Cone20ag0422 Cone-Chr20:2066692 Cone8ag0007 Cone-Chr8:86903 7.80E-196 dispersed
Cone8ag1312 Cone-Chr8:10665681 Cone20ag0422 Cone-Chr20:2066692 3.61E-10 dispersed
Cone17ag0817 Cone-Chr17:6507785 Cone20ag0422 Cone-Chr20:2066692 0 wgd
Cone20ag0422 Cone-Chr20:2066692 Cone6ag1257 Cone-Chr6:10028442 3.76E-162 wgd
Cone20ag0422 Cone-Chr20:2066692 Cone9ag1223 Cone-Chr9:8913265 5.75E-257 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g209 . . . . . . . . Cmo04g02508 Cmo15g00658 . . . . . . . Bhi04g01860 . . . . . Lcy10g1259 Cla08g00627 . . . . . . . . Cone17ag0817 Cone20ag0422 . Csa04g01957 . Cme03g00489 Blo17g00166 Blo18g00172 . Bda13g01465 Bpe02g01658 . Bma01g00797 . . . . . . Car04g02316 Car15g00595 Cpe01g02077 . . . . . . . . . . . . . . . Lsi08g00467 . Chy03g00749 .
Vvi18g1149 . . . . . . . . Cmo04g02508 Cmo15g00658 . . . . . . Cpe13g00644 Bhi04g01860 . . . . . Lcy10g1259 Cla08g00627 . . . . . . . . Cone17ag0817 Cone20ag0422 . . . . . . . . . . . . . . . . . Car04g02316 . Cpe01g02077 . . . . . . . . . . . . . . . Lsi08g00467 . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82539 None None None None Cone PK