Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0423 ATGAGTTCGTGCGAGAACTCAACTGTAATTCACGAACCTGTTGTTGAGCCTCCTACGTGCTTAGAGATTTTAGGGGAACCGGTCTCTGAGCAGCAGTCATGCATGGAGGAAGCTCACACGTCATTTGATTCTATGGTGGGTCCTAAAGATGAACCGGATCTATACGGACCAACTATAAATGACACCTCTGTCAAGGGAATAGGTGATACTGTTGCCATGGGAGATGGCTTGGTTGTAGACTCGGAAAGTATAAATGTTCGAATATTGGGAGAGACTTTTGAAAATAATTGTGGCATCAGTGAGGCCTGCTTAAATGAGAATCAGGGTGATATTTGCAATTCAGAGGATGGAAATGTGAGTGTGGAGGAGGGAGGGTCTCAAGGTGAGAACAATTTAGTCAGTCTGTTAGATGGTTGTGAAATGAACTTGGAAGTCACTGCTACAAGTGATTCTCTGAGTAATTGTGTGCAACCCGATGAACAGAATAAAGACGAGGATATCAGCCTGGTTGCTGAACAGGTGAAAGACCTTTTGGAAGTGGAATGCAATATTTCAGCCGGGGTGGAGACTAGTAATGGTGATCTAATATCTTCTTCGCGTGGTTGTGAAATGAGTTACAATCACTCATATGTCGATTGTTTGCCAAGTCAATACTCACAGAAGAATGGGATGGATGAGAAGAATGTCTGTGGTATTTCATCAGGGGTTGTAGATGAGAAAGCTGGTTCTGCAGCTGAAATATCAGCTTCAGTAGGTGATCATAAGCCTTCGACAGTAGCTAGTACTGGTATTGAGTGCAACCATGATAGCGTTCAAAAGTATGAAGAACGTATGAGTAGTTTCACTTCCGAACGGGTTATTGAGGTTTCTGATGTCCAAACGAATCCTGGTACAAGCATGCAAGTAGTATCTCCAGAGTGTTGTCAGAGTTCAATGAAAGAAATACGGTTGGATGATTCACTGGCTATCTGTGCCAAACCGAATGTAATGCTTGATGATGCTACTGTTAGTGGTCCTTCAGTAGAAATTACAGCTCAACCAATGGAAGACAATAGCGATAGTAACGGGGATCAAGTTACTGAATGCAACCAAGATAGTGATCAGCAGTATGAAGATATTGTAACTAATTTCTCTGCAGAAAGGCTTATTGAGGTTTCTGATGTTAAAAGCAATCTTGATACAACCATGCAAGTAGCATCTCCACAGTGCTATCAGATTTCAATGGAAGAAATACAGTTTGATGATTCACTGGCTATTTGTGCCCAACAGAATGGAATGCTTGATGACAAGACTGTTAGTGGTTCCTCAGTAGGAATTACAGCTCAACCTATGGAAGGCAGTAGCAATAGTACAAGTGATACAAAAGTTGATAATGGGAAATCTACATTGCTTGTGGAGGAAAATCCCAGCAATTTGAAAGATAGTTCCTCAACAGGGGCTCCCAGCTGTATTGTTGAGAAATTTGCTTCTCTATTATCATGTCAGCCTTTCGATGTTGCAAGTGGTAGTTCTTCTAAGATAGTGGATGCAACAAATATTTATAGAAATGATGATGGTTTTATTAATTCTAGCAGCAATGCTTGCTTTACAGGACAGACAGATGACAGCGTGAAAGATCCTGGAGTTTATGTTGTCTCTGAAACAGTAGCCTCATCCACTGGGAGGAGTGGCCAAAAAAGTAAACCAAGGAAGAAGGCCCTGAATAAAAGGGATGCTAGGAGGAGTAAAGCATCTAAAGTGCTCCCGCCACATGTAAATTTTGAAATTATCCTTGAGGGAGCAAGGAGGAAGAGAAGCTGTGTCTCCAAACCAGCTCGGTCTTCTCTCTGGGGCTCATCTGCCTGTAAAATTCAGTTTTTTGAGCAAAGCAATCTGCATGGTCTTAGTCAAATTCAGACACCAGGATCGAGAAAACCAAGGGATGGGCGAGGGAGTGCAAAGAGGAATGGGAATAAGGCAAGTGGAAGAGCACGGGGATCCATGAAAGAGTCCAGAGGAAAGTCTTCTGCTTCTACAAGTCGAATTCATTTGAAGGTCAAATTTGGAAAAGGGGTGGACGAAAACTGTCTAAACTTTTTAGTTCCGGGGGACGTTTATCCAAAACTTTCTGCTAAGGCTGTCAGTAGCAGTAACGGGAGCGAGTCATACTCGGAAACTAATTTGGAGCTGCTAAAATTAACCAATAGCCTTGAAGTTAAAAGAAGTGAAGATGGAACTTTAAGAGAACTTGATTGTTTCAGCAAAAATCCACTGATGGCAAAAGCACATATTGATGCTTCTGAATCGAATGATCATCCTGCAAAAAAGGAATCTTATAGCACTGTGATGATAGAAAAGTCAACGGAAGAGCATCTGGACAATTACTCTGGGACTTGTACTGAGGCGAGTGAACCATTGGAAAGGGCAAGTGTGACTGGGTGTTTGGACCCTGGTACTTCACCTGATTCAGAAGTGATAAATCCAGTCTCAGATGCTCAAGTTGGGGGGAGTTATCAAGAACTGCAAAATTCTGCTTTGACTTCTGCCCAGGATTTTGTTGCCCCTGAGAATAAGATAGATAAGAAAAAAGAGAAGTTCAGCTTCCCAGCTAGTAGAAATAGAGCAAAATCATCAAAGAAGCATGGAAGTGGTGATGAGTTTTTCCCAACAGATATAGGCATTGGATTTTCTGAATCAAAAACTTTGAAGGGTTCTGTTCCTGTTAAAGCTGCAAGACAGAAGCCTTCCAAAAGTTCAAAATCCAGTAAGTCGAGTAAAGGCAGGTCCAAGGCCTCTGAGCCGGGTAAGAGGGGAGGGAACACTCATAAACAGATGGAAAATCAGCATAAATCTGTTACTGAGAGAAAAGCTAAGGAATATGGTGTTTCTGATTCAGTTGTGTCTAATGCGGATAATGCAGAAATAGGAAATAGCATTGTGGACACTATGGGGAAAACAATAATTGGTGATAATATTGCATCTATAGAATCACCCAACTTGAATGTGGTACAAGGGTTTTCAAGCGAGCAGTATGTACAGCCTCGCAATGCTTGGGTGCTCTGTGATGATTGTCAAAAGTGGCGGCGCATCGCAGCTTCTCTTGTGGATAGTATAGGACAAGAAAATTGCACATGGACTTGTAAGGACAGCTTGGATAAAGCTTTTGCTGATTGCTCGATACCCCAAGAGAAGTCAAACGCAGAGATTAATATGGAGCTGGAAATATCAGATGGCTCTGGTGATGAAGATGCCTCCAATAGTCGTCGAAGTTATAGGAAATTGGAATATCAGCGTCCAACAGTTTCACAAGAGCACGCATTTAAGAGGATTGATACTAATCAGTTTCTGCATCGAAGCCGTAAAACTCAAACTATTGATGAGATAATGGTCTGCCATTGCAAACCACCTCAAGATGGCCGGTTGGGTTGTGGAGATGAATGCCTGAACCGAATGCTTAATATTGAATGTGTTCGAGGCACCTGCCCTTGTGGAGACCGTTGTTCTAATCAGCAGTTCCAAAAACGAAAATATGCCAAACTGGAGTGGTTTCGTAGTGGAAAAAAGGGATATGGGCTACAGTCGACTGAAGATATATCACAAGGACAATTTCTCATCGAATATGTTGGAGAGGTGCTTGATATGAATTCTTATGAGGCACGGCAGAAAGAGTATGCTCTGAATGGACATCGACATTTCTACTTCATGACATTGAATGGCAGCGAGGTAATTGATGCCTGTGCAAAAGGAAATTTGGGGCGTTTCATTAACCACAGCTGTGAACCCAACTGTCGAACCGAGAAGTGGATGGTGAACGGAGAGATATGCATTGGTCTATTTGCAGTAAGGAATATTAAGAAGGGTGAAGAGGTGACGTTCGACTACAACTACGTGAGGGTATTTGGGGCTGCTGCTAAAAAGTGTTACTGTGGTTCTTCTCAATGTCAAGGTTATATAGGTGGGGACCCACAGAATTCCGAAGTCATTGTGGAAAGTGATTCAGATGAAGAATTTCCTGAACCTGTGATGCTTGGAGAAAATGGTAAAATGGGACATAGCAAGTCTAGAAGAGCTACTCTCTCCGATCATGTTGAAATGCATACAGTTGGAAGCATAACTGAGGGTAAAGATAAAATTGATCAATCTATCACTGCCATCCGACAGTTGGAGATAAAGGCAGAGAGAGATGATCCTTTGAACCTCTCTTCTTCTACTCTTACCCAGTTACACAGCTCATTGGAATTTGAGGACTCAAAGGCAAAAGAATCAACATTTATTCGACCACATGAAAGTTCCCAACAAATAGATGATGTAACAAGCAAACCTATGACTTGTGTTGAGCAGGACATTTCTGCTGTAGAGGAGACTTCGGAGAAAATGTTATACTCCGGGGAAAGAGTAGAGAGTTCTTGTCCTCTGCTACTTGAAGAAACATTAACTAATGGCACTGACTCTGATCAAAAGACTAAGTCAGATACTATTGAAGACAAGCAAGTGTGTTCCAAAAAATTTCCCCGTGTGAAAACTTCCCGTAAAGAAGGTTCTTATGGGAAAGTAAAAGTTGATAATAATTCTTTATATGTTAACACATTTAAGGTGACATCCATTAAGTCACATACATTGTCTATCAAACCCAAAAAATTAATGGAAGGAACTCCTAGCCGCTTTGAAGCAGTTGAGGGGAAACTTAATGAGCTACTGGATGCTGATGGGGGGATAAGCAAAAGAAAAGATGCCCCTAAAGGATACTTAAAGCTTCTACTTCTCACTGCGGCATCAGGCGATAGTGGCAATAGTGAAGCAATACAGAGCAATCGTGATCTTTCAATGATCCTCGATGCAATTTTGAAGACAAAATCACGAGCGGTTCTAATCGACATTATAAGCAAAAATGGTCTGCAGATGCTACACAAGATGATGAAACAGTACAGAAGGGACTTCAAAAAGATTCCCATACTCCGGAAGCTTCTCAAGGTCTTCGAGCATATGGCAGCGAAGGAGATCCTAACATCAGAACAGATTACTGCGGGCCCACCTTGCCTGGGAATGGAGAGTTTTAGGGAGTCGATACTGTCCCTGACAGAGCACAATGACAAACAGGTCCATCAAATAGCCCGAAAATTTCGAGATAGATGGATCCCTAGGCCTCTCAGGAAAATTGGCGAAAGTAGGATGGATATTCACAGGGGTCCAAACTGTAATAGGCTCTCAGCACAAAGGAGTTATCAGCATGAACAGGATATAAAACCAACAGAAGCAATAGTCTCGCTTAACCCAACAATGCCTCCTACCTTTGCAGTAGATCCTCCTATCCCAGGCAGCAGTTCTGAGGCTCAGGCTAGTGGTGACAAAAATAATGGAACTACAACTCGTAAAAGAAAGAGCCGATGGGATCAGCCAGCAGATCCAAATAAAGCACTGAAGGTTGAGTCTAGTGGTCAAGCGACGCTTGATAATGTAAACAAGGTAAAGAGGGAGGAGACAAGCTCCTCTTTCTCAAGTCTCTGTCAGCAGCAAGGTGAAGCTATGATGATTGACACTAGAATACAGGATATCTATGAGGATGGCCCACCTGGATTTCTATCTATCCCTGAGGATGCTCCACCTGGATTTTCATGCCCCCTTGTTTCCCATCCAGTTTCAGCAAATGCTTCAGCGACTACTACCTCAATTGGGTATCCACAGGAGAGATTTATTTATCGCTTGCCAGTGTCTTATGGGATTCCATTTTCTATTGTGCAGCAATTCGGAATACCAGAACATGAAAATTCGGAAAGCTGGACTATTGCTCCAGGAATACCTTTTCATCCCTTTCCACCATTACCCCCATATCCATTGGATAAGAAAACCCATCCATATTGTGATGCTATAATCAAACGACCCTTGGAAGAAGGGAAAAGAGACAGCATTGAAACTCACTCATGTAATTATTCTGATGATACCTCTGCTAGTACTAGTGCTGACCAATCCGATATGAATACATCATCTGCTTGCAACCATGAGATCTTGAAACCAGTCAAGGAGTTGTCGACTGATTTGGGAAAAAGGTATTTCAGGCAGCAAAGGTGGAATGGTCCAAAGGTGGGACCCCCATGGAAGAGGAATTCGTGGGGTCATCCTTACTCGAGAATACGAAATGGTAATATAGCTAATGAGAACATAAGCTCACATTGTGAAGACAAAGTAAGCTATAAAGGGGACAATCTGGGGAGTGATATTTATCATCATCATACACAGAACCAAAATCAGCATTGA 6231 42.22 MSSCENSTVIHEPVVEPPTCLEILGEPVSEQQSCMEEAHTSFDSMVGPKDEPDLYGPTINDTSVKGIGDTVAMGDGLVVDSESINVRILGETFENNCGISEACLNENQGDICNSEDGNVSVEEGGSQGENNLVSLLDGCEMNLEVTATSDSLSNCVQPDEQNKDEDISLVAEQVKDLLEVECNISAGVETSNGDLISSSRGCEMSYNHSYVDCLPSQYSQKNGMDEKNVCGISSGVVDEKAGSAAEISASVGDHKPSTVASTGIECNHDSVQKYEERMSSFTSERVIEVSDVQTNPGTSMQVVSPECCQSSMKEIRLDDSLAICAKPNVMLDDATVSGPSVEITAQPMEDNSDSNGDQVTECNQDSDQQYEDIVTNFSAERLIEVSDVKSNLDTTMQVASPQCYQISMEEIQFDDSLAICAQQNGMLDDKTVSGSSVGITAQPMEGSSNSTSDTKVDNGKSTLLVEENPSNLKDSSSTGAPSCIVEKFASLLSCQPFDVASGSSSKIVDATNIYRNDDGFINSSSNACFTGQTDDSVKDPGVYVVSETVASSTGRSGQKSKPRKKALNKRDARRSKASKVLPPHVNFEIILEGARRKRSCVSKPARSSLWGSSACKIQFFEQSNLHGLSQIQTPGSRKPRDGRGSAKRNGNKASGRARGSMKESRGKSSASTSRIHLKVKFGKGVDENCLNFLVPGDVYPKLSAKAVSSSNGSESYSETNLELLKLTNSLEVKRSEDGTLRELDCFSKNPLMAKAHIDASESNDHPAKKESYSTVMIEKSTEEHLDNYSGTCTEASEPLERASVTGCLDPGTSPDSEVINPVSDAQVGGSYQELQNSALTSAQDFVAPENKIDKKKEKFSFPASRNRAKSSKKHGSGDEFFPTDIGIGFSESKTLKGSVPVKAARQKPSKSSKSSKSSKGRSKASEPGKRGGNTHKQMENQHKSVTERKAKEYGVSDSVVSNADNAEIGNSIVDTMGKTIIGDNIASIESPNLNVVQGFSSEQYVQPRNAWVLCDDCQKWRRIAASLVDSIGQENCTWTCKDSLDKAFADCSIPQEKSNAEINMELEISDGSGDEDASNSRRSYRKLEYQRPTVSQEHAFKRIDTNQFLHRSRKTQTIDEIMVCHCKPPQDGRLGCGDECLNRMLNIECVRGTCPCGDRCSNQQFQKRKYAKLEWFRSGKKGYGLQSTEDISQGQFLIEYVGEVLDMNSYEARQKEYALNGHRHFYFMTLNGSEVIDACAKGNLGRFINHSCEPNCRTEKWMVNGEICIGLFAVRNIKKGEEVTFDYNYVRVFGAAAKKCYCGSSQCQGYIGGDPQNSEVIVESDSDEEFPEPVMLGENGKMGHSKSRRATLSDHVEMHTVGSITEGKDKIDQSITAIRQLEIKAERDDPLNLSSSTLTQLHSSLEFEDSKAKESTFIRPHESSQQIDDVTSKPMTCVEQDISAVEETSEKMLYSGERVESSCPLLLEETLTNGTDSDQKTKSDTIEDKQVCSKKFPRVKTSRKEGSYGKVKVDNNSLYVNTFKVTSIKSHTLSIKPKKLMEGTPSRFEAVEGKLNELLDADGGISKRKDAPKGYLKLLLLTAASGDSGNSEAIQSNRDLSMILDAILKTKSRAVLIDIISKNGLQMLHKMMKQYRRDFKKIPILRKLLKVFEHMAAKEILTSEQITAGPPCLGMESFRESILSLTEHNDKQVHQIARKFRDRWIPRPLRKIGESRMDIHRGPNCNRLSAQRSYQHEQDIKPTEAIVSLNPTMPPTFAVDPPIPGSSSEAQASGDKNNGTTTRKRKSRWDQPADPNKALKVESSGQATLDNVNKVKREETSSSFSSLCQQQGEAMMIDTRIQDIYEDGPPGFLSIPEDAPPGFSCPLVSHPVSANASATTTSIGYPQERFIYRLPVSYGIPFSIVQQFGIPEHENSESWTIAPGIPFHPFPPLPPYPLDKKTHPYCDAIIKRPLEEGKRDSIETHSCNYSDDTSASTSADQSDMNTSSACNHEILKPVKELSTDLGKRYFRQQRWNGPKVGPPWKRNSWGHPYSRIRNGNIANENISSHCEDKVSYKGDNLGSDIYHHHTQNQNQH 2076
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2080667 2099749 - Conep20aG0043700.1 Cone20ag0423 460327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0423 2076 ProSiteProfiles AWS domain profile. 1119 1169 IPR006560 GO:0005634(InterPro)|GO:0042054(InterPro)
Cone20ag0423 2076 MobiDBLite consensus disorder prediction 1965 1988 - -
Cone20ag0423 2076 Pfam AWS domain 1133 1168 IPR006560 GO:0005634(InterPro)|GO:0042054(InterPro)
Cone20ag0423 2076 ProSiteProfiles SET domain profile. 1171 1288 IPR001214 GO:0005515(InterPro)
Cone20ag0423 2076 SUPERFAMILY SET domain 1099 1309 IPR046341 -
Cone20ag0423 2076 MobiDBLite consensus disorder prediction 849 863 - -
Cone20ag0423 2076 MobiDBLite consensus disorder prediction 1748 1808 - -
Cone20ag0423 2076 MobiDBLite consensus disorder prediction 628 672 - -
Cone20ag0423 2076 Gene3D SET domain 1068 1329 IPR046341 -
Cone20ag0423 2076 MobiDBLite consensus disorder prediction 1779 1795 - -
Cone20ag0423 2076 MobiDBLite consensus disorder prediction 548 579 - -
Cone20ag0423 2076 CDD SET_SETD2 1170 1312 IPR044437 GO:0046975(InterPro)
Cone20ag0423 2076 SMART PostSET_3 1296 1312 IPR003616 -
Cone20ag0423 2076 MobiDBLite consensus disorder prediction 849 881 - -
Cone20ag0423 2076 ProSiteProfiles Post-SET domain profile. 1296 1312 IPR003616 -
Cone20ag0423 2076 MobiDBLite consensus disorder prediction 558 572 - -
Cone20ag0423 2076 SMART set_7 1171 1294 IPR001214 GO:0005515(InterPro)
Cone20ag0423 2076 Gene3D - 1008 1067 - -
Cone20ag0423 2076 FunFam Histone-lysine N-methyltransferase 1003 1064 - -
Cone20ag0423 2076 SMART shorttest3 1119 1170 IPR006560 GO:0005634(InterPro)|GO:0042054(InterPro)
Cone20ag0423 2076 MobiDBLite consensus disorder prediction 1967 1988 - -
Cone20ag0423 2076 MobiDBLite consensus disorder prediction 347 366 - -
Cone20ag0423 2076 FunFam Histone-lysine N-methyltransferase 1070 1326 - -
Cone20ag0423 2076 MobiDBLite consensus disorder prediction 1409 1430 - -
Cone20ag0423 2076 MobiDBLite consensus disorder prediction 919 953 - -
Cone20ag0423 2076 Pfam SET domain 1182 1288 IPR001214 GO:0005515(InterPro)
Cone20ag0423 2076 PANTHER SET DOMAIN PROTEINS 507 1956 IPR050777 GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0046975(PANTHER)
Cone20ag0423 2076 ProSiteProfiles Zinc finger CW-type profile. 1005 1059 IPR011124 GO:0008270(InterPro)
Cone20ag0423 2076 Pfam CW-type Zinc Finger 1011 1057 IPR011124 GO:0008270(InterPro)
Cone20ag0423 2076 MobiDBLite consensus disorder prediction 1066 1085 - -
Cone20ag0423 2076 MobiDBLite consensus disorder prediction 895 953 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0423 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1298 Cone-Chr10:10127909 Cone20ag0423 Cone-Chr20:2080667 2.14E-12 dispersed
Cone20ag0423 Cone-Chr20:2080667 Cone4ag0568 Cone-Chr4:2581120 2.58E-38 dispersed
Cone20ag0367 Cone-Chr20:1668039 Cone20ag0423 Cone-Chr20:2080667 1.14E-54 transposed
Cone17ag0818 Cone-Chr17:6522515 Cone20ag0423 Cone-Chr20:2080667 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g211 Blo01g01308 . Bda01g00676 . Bpe02g00629 . . Bma01g02090 Cmo04g02507 Cmo15g00659 . . . . . . . Bhi04g01862 Tan11g1236 . . Hepe02g2211 . Lcy10g1258 Cla08g00625 Cam08g1044 Cec08g0630 Cco08g0742 Clacu08g0751 . Cre08g0560 . . Cone17ag0818 Cone20ag0423 . . . Cme03g00490 . . . . . . . . . . . . . Car04g02314 Car15g00596 Cpe01g02076 . . . . . . . . . . . . . . . Lsi08g00466 . Chy03g00750 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003381 1 5 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 2 1 6 3 1 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45590 None None None None Cone TR