Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0426 ATGGAGTTGCCGGAATGTCCAGTTTGCTTACAAAACTACGACGGCGCGTGTACAATTCCACGCGTACTCAATTGCGGGCACACAGTCTGCGAGCTTTGCCTAACCAGTCTCCCTCAACGTTTCCCTCTCACTATTCGTTGCCCCGCTTGTACCGTGCTCGTCAAATATCCATCGCAAGGCCCTTCTTCTCTCCCTAAAAACATCGATCTTCTCCGAATCTCACCCTCCGAACAAACCCCTAGTTCCCCAAAATCCCACAATGAAAAACAACCACCAAATGGCCGATTTGACGACAATTTTTTCCCTCGGTTTTGGTCCGACGAGTTTTACACTACTTGGAAGGGTTGGATCCTCCCTTCCGACGTCGTTTCAGTGGAGAATGGTGGAGATGATGAAGGTCTGGTGCGAGGGAGGATCGTTTCTTCTTCTTCTTCGTCTTCTTCATTGCCGGTTTTGGTGAGAGATGAACAAATGGTGAGTCTTACTCGAGTTGTTGCTTTACCTAGTGGAAATGTTAATTCTTCGTTTAATTTTGGCTATTTTGCGAGTGTTTTGAAATGCTTGAATGAGATGACTGAGGAGAGGAGGGATGAATTGAGGTTGATTCTGAGAGCTGGTGCGAAGCTTTGTGGAAAAGTGTGTAGAGCTTATGGATTGTGGGCTAATATGGGAGACGGGTTTCTGTATTTAGTGTGTGAAAGGAAAAATGTAATATTGATGGAGAAGAAATTTAGTGATTTAGATTATGGTTTGAGCAAGGATGTCATTCGTGGGTTTGCAATGATTGGTGTCGAGATTTGTGAAGCAATGATTGCTTTGCATTCCCAAGGACTTTATGCAGGTTCTTTTGGTCTTTCATGTTTCAGTCTTGATGATTTTCATCATGTTTCTGTTGATCTAAATGAGGTTTTGGTGATTGGAAAGAAGACTCATTGGACGGTAGTGGAGGCTTGTTCTAGTAGGTTAAGGATTGATGGTAAAGAATTAGGATTGCTATTTCGGAATTTATTGAAGCAAGAAGTGTTTATCAGCCCAGAGGTTTTCCTCGAGTTGTTGCAGAAAGATGGGGTTCTAGTGGAATGTAATAGTGGAAGAAGATCTTCAATTGGATATTGTGTGGATGTTTGGCCATTAGCTTGTGTATTGCTGAGGCTTCTCATAGGAAATGAATTCTTTGAAGAAGTTGTTGAAGATAGTGAGGAAGATTATTCTGATTATTCAACTTGGTATACAAGTTGGATGGAAAAGGTTAGTTCTTTAATGGACATCAAGTTGGATTCACATTCTTTAGAATACTCATCATTGAGGCAAATTCTCTGCAGATGTCTGAATTTTGATCCAGAAAGCCGTCCATCTATGACTGAACTGAGGAGTAACATTAGGGAATTGATTATCAAACCTCAGTTTGATATGTTTTCTGGTTTTGAGGGACCATCAATTGGTGAAAACGGCAATAATTGTTGTTTGATTCTAGGAAATCTCTTTGAGTTCAACAAGATGTTGCCGGAAATGCCGAAAGATGATGAGAGAGAAGTTAATGGTGGTGGTGGAGATACTGATAAATTTGGAGAGGATAAGGTGGAAAAAAATTTCATTGAAGGCTTATCAGAAGGAATGGTGAAATTTAAAGAACTCATTGGTCATCGTGATTGTGTTACGGGGTTAGCAGTGGGAGGGAATTTTCTGTTTAGTTCTTCAATGGATAAAACTATCAATGTATGGTCTTTGCAGGATTTCATTCATGTGCATACATTTAGAGGTCATGAGCATAAAGTCATGGCTCTGGTCTATGCAGATGAAGAAAAGCCATTATGCGTAAGTGCTGATAGTGGAGGTGGCATATTCACCTGGGACGTCAGCTTTCCTCTTAAGGAAGAGCCATTAAAGAAATGGTATGAGGAGAAAGATTGGCGCTATAGTGGTATTCATGCATTGGCCATTTCTGAAAAGGGATACCTTTACACTGGAAGTGGTGATAAATCTATTAAAGCATGGAAATTAAAGGATGGCACCTTGTTATACACTATGAATGGTCATAAGTCAGTAGTTTCAACTCTTGCTGTGTATGATAGGCTTCTCTATAGTGGCAGTTGGGATGGAACTATCCGTCTATGGAGCCTTGTAAATCACAGTCCTTTGGCGGTACTTGAAGAAGACGCATCTGGAGCTTTGAATTCTGTTTTGTCTCTAACAGCTGATGAGCACTTTCTTGTTGCCGCTTTTGAAAATGGATGCATTAAGGTATGGAAGAATGATGTGTCTATGAAATCCGTGCAGTTGCATAATTCTGCAATTTTCTCTATAGACATGGATGGGCAGTGCCTATATACAGGAGGTTGGGATAAAAGTGTCAATGTACAGGTATTATCAGGAGATGAACTTGAACTGAATGTGAATCAAATCGGAACTATCCCCTGCACTTCTGTAATAACAACCATACTCTTCTGCCAGGGAAAGCTTTTTGTTGGATTTGCTGATAAGTCCGTTAAGGTGTATTCTTATGAAAAGTGA 2511 40.74 MELPECPVCLQNYDGACTIPRVLNCGHTVCELCLTSLPQRFPLTIRCPACTVLVKYPSQGPSSLPKNIDLLRISPSEQTPSSPKSHNEKQPPNGRFDDNFFPRFWSDEFYTTWKGWILPSDVVSVENGGDDEGLVRGRIVSSSSSSSSLPVLVRDEQMVSLTRVVALPSGNVNSSFNFGYFASVLKCLNEMTEERRDELRLILRAGAKLCGKVCRAYGLWANMGDGFLYLVCERKNVILMEKKFSDLDYGLSKDVIRGFAMIGVEICEAMIALHSQGLYAGSFGLSCFSLDDFHHVSVDLNEVLVIGKKTHWTVVEACSSRLRIDGKELGLLFRNLLKQEVFISPEVFLELLQKDGVLVECNSGRRSSIGYCVDVWPLACVLLRLLIGNEFFEEVVEDSEEDYSDYSTWYTSWMEKVSSLMDIKLDSHSLEYSSLRQILCRCLNFDPESRPSMTELRSNIRELIIKPQFDMFSGFEGPSIGENGNNCCLILGNLFEFNKMLPEMPKDDEREVNGGGGDTDKFGEDKVEKNFIEGLSEGMVKFKELIGHRDCVTGLAVGGNFLFSSSMDKTINVWSLQDFIHVHTFRGHEHKVMALVYADEEKPLCVSADSGGGIFTWDVSFPLKEEPLKKWYEEKDWRYSGIHALAISEKGYLYTGSGDKSIKAWKLKDGTLLYTMNGHKSVVSTLAVYDRLLYSGSWDGTIRLWSLVNHSPLAVLEEDASGALNSVLSLTADEHFLVAAFENGCIKVWKNDVSMKSVQLHNSAIFSIDMDGQCLYTGGWDKSVNVQVLSGDELELNVNQIGTIPCTSVITTILFCQGKLFVGFADKSVKVYSYEK 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2118673 2122322 - Conep20aG0044000.1 Cone20ag0426 460330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0426 836 Gene3D Transferase(Phosphotransferase) domain 1 234 464 - -
Cone20ag0426 836 ProSiteProfiles Protein kinase domain profile. 161 464 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0426 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 545 584 IPR001680 GO:0005515(InterPro)
Cone20ag0426 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 652 675 IPR001680 GO:0005515(InterPro)
Cone20ag0426 836 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 676 707 - -
Cone20ag0426 836 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Cone20ag0426 836 Pfam RING-type zinc-finger 6 48 IPR027370 -
Cone20ag0426 836 SUPERFAMILY RING/U-box 5 59 - -
Cone20ag0426 836 SMART WD40_4 797 833 IPR001680 GO:0005515(InterPro)
Cone20ag0426 836 SMART WD40_4 751 788 IPR001680 GO:0005515(InterPro)
Cone20ag0426 836 SMART WD40_4 538 575 IPR001680 GO:0005515(InterPro)
Cone20ag0426 836 SMART WD40_4 669 706 IPR001680 GO:0005515(InterPro)
Cone20ag0426 836 SMART WD40_4 624 666 IPR001680 GO:0005515(InterPro)
Cone20ag0426 836 SMART WD40_4 578 618 IPR001680 GO:0005515(InterPro)
Cone20ag0426 836 SMART WD40_4 709 750 IPR001680 GO:0005515(InterPro)
Cone20ag0426 836 Gene3D - 524 625 IPR015943 GO:0005515(InterPro)
Cone20ag0426 836 PRINTS G protein beta WD-40 repeat signature 562 576 IPR020472 -
Cone20ag0426 836 PRINTS G protein beta WD-40 repeat signature 653 667 IPR020472 -
Cone20ag0426 836 PRINTS G protein beta WD-40 repeat signature 693 707 IPR020472 -
Cone20ag0426 836 Pfam WD domain, G-beta repeat 757 786 IPR001680 GO:0005515(InterPro)
Cone20ag0426 836 Pfam WD domain, G-beta repeat 543 575 IPR001680 GO:0005515(InterPro)
Cone20ag0426 836 Pfam WD domain, G-beta repeat 670 706 IPR001680 GO:0005515(InterPro)
Cone20ag0426 836 MobiDBLite consensus disorder prediction 74 98 - -
Cone20ag0426 836 SMART serkin_6 176 469 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0426 836 SMART ring_2 6 50 IPR001841 -
Cone20ag0426 836 Gene3D - 626 836 IPR015943 GO:0005515(InterPro)
Cone20ag0426 836 ProSiteProfiles Zinc finger RING-type profile. 6 51 IPR001841 -
Cone20ag0426 836 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Cone20ag0426 836 CDD RING-HC_TRIM32_C-VII 4 53 - -
Cone20ag0426 836 SUPERFAMILY WD40 repeat-like 540 834 IPR036322 GO:0005515(InterPro)
Cone20ag0426 836 PANTHER - 21 834 - -
Cone20ag0426 836 SUPERFAMILY Protein kinase-like (PK-like) 179 463 IPR011009 -
Cone20ag0426 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 676 715 IPR001680 GO:0005515(InterPro)
Cone20ag0426 836 MobiDBLite consensus disorder prediction 74 89 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0426 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0426 Cone-Chr20:2118673 Cone15ag0351 Cone-Chr15:1637834 2.93E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g220 . Blo12g01120 . Bda03g00019 . . Bma04g00018 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0426 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013185 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82540 None None None None Cone PK