Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0427 ATGATAAAATTTTCCCGAAATCTATCCTTAGGATGGAGATTAGAGGCTAGAAGATACAGTTTGAGCGTACAAACAAATGAGATTTCAGATTGTACGAGAAAAATATGTAAGATCATGATGTCGTGTCCTGCGTTAGGACTTGATACTGCTCTTAGCCAGAGTGGAGTTAGAATTTCACCTGATCTAGTCGAAGCTGTTCTCAGCAGATTCGAGAATGGAGGTATGTTAGCATATAGATTCTTTGAATGGGCTTCAAGGCAACAAAATTATGAACATACCGTTAGGGCATACCACACTATGATTGAGTCTTTGGCTAAGATAAGGCAATATCAGGTTGTATGGGACCTTGTCAATGCTATGAGGAAAAAAGGGACTCTGAATGTGGAGACCTTTTGTACTATTATGAGAAAGTATGCTCGGGCTCGGAAGGTGGAGGAGGCGATTTACACATTTAATGTCATGGAAAAATACGACATTAAACCAAATCTTGCAGCTTTTAACGGCTTGCTAAGTGCTTTATGCAAGTCCAAGAACGTGAGGAAAGCTCAAGAGATATTCGATTCCATGAAGGACCAGTTTGATCCAGACTTGAAAACTTATTCGATTCTGCTTGAAGGGTGGGGCAAAGCGCCGAATTTACCAAAAGCCAGGGAGATTTTTAGAGAAATGGTTGACATGGGTTGCACTCCTGATATAGTGACACATGGCATTATGGTAGATGTTCTTTGCAAGGCAGGGAGGGTTGATGAAGCTGTTGAGGTTGTTAAGGAAATGGATTCTAGGGCTTGTAAGCCAACGTCTTTTATTTATAGTGTTTTGGTTCATACTTATGGGATAGAAAACCGAATTGAGGATGCAGTAGATACCTTCTTGGAGATGGAAAGAAATGGAGTTAGGGCTGATGTGGCGGTGTATAATTCCTTGATTAGTGCTTTCTGTAAAGTAAACAGGTTCAAAAATGTTTATAGGGCATTAAAGGAGATGGGTGAAAAGGGTGTTAACCCCAATTCGAGGACTTGCAATATAATCATAAACGGTTTGATTGGAAATGGAGAGACCGATGAGGCGTTTAGGGTGTTTCGTAGAATGAGGAAGGTTTGCGAACCGGATGCAGATACATATACTATGATGATAAAGATGTTTTGTGAGCGGAACGAGATAGAGACAGCTCTTAAGATTTGGAAGTATATGAGGGCAAAGAGATTTGTTCCAAGCATGCATACTTCTTCAGTTATGATAAACGGGTTGTGCAAAATGGGTGACTCTAAAGATGCCTGTGTGTTTTTGGAAGAGATGATGGAGAGGGGAATACGGCCTTCAAGTGTGACTTTTGGGAGGTTGAGACAGTTGCTTTTGAAGGAAGGAAGAGAAGATGTCCTTAAATTTCTTCAAGAGAAAATGAATTTATTGGTCAAGGAACCGTTATGTGATTGA 1434 40.38 MIKFSRNLSLGWRLEARRYSLSVQTNEISDCTRKICKIMMSCPALGLDTALSQSGVRISPDLVEAVLSRFENGGMLAYRFFEWASRQQNYEHTVRAYHTMIESLAKIRQYQVVWDLVNAMRKKGTLNVETFCTIMRKYARARKVEEAIYTFNVMEKYDIKPNLAAFNGLLSALCKSKNVRKAQEIFDSMKDQFDPDLKTYSILLEGWGKAPNLPKAREIFREMVDMGCTPDIVTHGIMVDVLCKAGRVDEAVEVVKEMDSRACKPTSFIYSVLVHTYGIENRIEDAVDTFLEMERNGVRADVAVYNSLISAFCKVNRFKNVYRALKEMGEKGVNPNSRTCNIIINGLIGNGETDEAFRVFRRMRKVCEPDADTYTMMIKMFCERNEIETALKIWKYMRAKRFVPSMHTSSVMINGLCKMGDSKDACVFLEEMMERGIRPSSVTFGRLRQLLLKEGREDVLKFLQEKMNLLVKEPLCD 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2122854 2125483 - Conep20aG0044200.1 Cone20ag0427 460331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0427 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Cone20ag0427 477 Gene3D Tetratricopeptide repeat domain 47 176 IPR011990 GO:0005515(InterPro)
Cone20ag0427 477 Gene3D Tetratricopeptide repeat domain 177 279 IPR011990 GO:0005515(InterPro)
Cone20ag0427 477 Pfam PPR repeat 226 258 IPR002885 -
Cone20ag0427 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Cone20ag0427 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Cone20ag0427 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 366 IPR002885 -
Cone20ag0427 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Cone20ag0427 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 192 IPR002885 -
Cone20ag0427 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Cone20ag0427 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Cone20ag0427 477 Pfam PPR repeat family 369 418 IPR002885 -
Cone20ag0427 477 Pfam PPR repeat family 301 347 IPR002885 -
Cone20ag0427 477 Pfam PPR repeat family 161 206 IPR002885 -
Cone20ag0427 477 Pfam PPR repeat 96 124 IPR002885 -
Cone20ag0427 477 Pfam PPR repeat 269 298 IPR002885 -
Cone20ag0427 477 Pfam PPR repeat 130 158 IPR002885 -
Cone20ag0427 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Cone20ag0427 477 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 51 328 - GO:0009507(PANTHER)|GO:0010019(PANTHER)|GO:0031930(PANTHER)
Cone20ag0427 477 NCBIfam pentatricopeptide repeat 165 192 IPR002885 -
Cone20ag0427 477 NCBIfam pentatricopeptide repeat 304 336 IPR002885 -
Cone20ag0427 477 NCBIfam pentatricopeptide repeat 269 301 IPR002885 -
Cone20ag0427 477 NCBIfam pentatricopeptide repeat 339 365 IPR002885 -
Cone20ag0427 477 NCBIfam pentatricopeptide repeat 130 162 IPR002885 -
Cone20ag0427 477 NCBIfam pentatricopeptide repeat 233 266 IPR002885 -
Cone20ag0427 477 NCBIfam pentatricopeptide repeat 411 440 IPR002885 -
Cone20ag0427 477 NCBIfam pentatricopeptide repeat 373 405 IPR002885 -
Cone20ag0427 477 NCBIfam pentatricopeptide repeat 199 232 IPR002885 -
Cone20ag0427 477 Gene3D Tetratricopeptide repeat domain 280 475 IPR011990 GO:0005515(InterPro)
Cone20ag0427 477 SUPERFAMILY TPR-like 92 433 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0427 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0427 Cone-Chr20:2122854 Cone5ag0485 Cone-Chr5:2040049 1.34E-31 dispersed
Cone20ag0427 Cone-Chr20:2122854 Cone11ag0542 Cone-Chr11:3042083 1.29E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g221 . . . . . . . . . Cmo15g00663 . . . . Sed14g0950 . . Bhi04g01871 Tan11g1243 Cmetu09g0635 . Hepe02g2215 . . Cla08g00621 Cam08g1035 Cec08g0624 Cco08g0736 Clacu08g0745 . Cre08g0553 . . . Cone20ag0427 . . . . . . . Bda13g01470 . Bpe14g00395 . Bma02g00206 . . . . . . Car15g00602 . . . . . . . . . . . . . . . . Lsi08g00461 . Chy03g00757 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010579 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32