Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone20ag0432 | ATGGCAAGTCAGCAGCAGCAAGAATCACGGGGGGGTGGTAGAGACACGGCTGCATTTGGTGGCGGCAGCACCACCAGGATTGCGGCTATCAACATTGAGGCCTTCGAAATGACTCCACAAGAGAAATCTGTCGGTAACGATATTAAACCTGGATGGAGAAAGTTTCTGTCCTTTGTCGGACCGGGATTCCTTGTTTCATTAGCTTATCTTGACCCTGGAAACTTAGAAACTGACCTGCAAGCCGGGGCTAACCATGGATACGAGCTTCTTTGGGTGATTCTTATCGGAATGGTCTTTGCTCTCATCATTCAATCACTTGCTGCTAATCTTGGTGTGAGCACTGGAAAACACCTCTCGGAATTATGCAAAGCTGAATATCCAAAATTCATAAAATATTGTCTTTGGCTTTTAGCTGAACTTGCTGTCATAGCAGCTGATATACCTGAAGTGATTGGAACAGCCTTCGCATTAAATATATTGTTCAATATTCCTGTTTGGGTTGGAGTTCTCATAACTGGTCTCAGCACACTCTTACTTCTTAGCCTTCAAAGATATGGGGTGAGGAAGCTGGAAATGTTGATAACAGTACTTGTCTTCGTAATGGCGGGATGTTTCTTTGGGGAGATGAGTTATGTGAAGCCTCCGGCGAAAGAAGTGCTTAAGGGCATGTTTGTACCAAAGCTCAGCGGCCAAGGAGCCACCGGGGATGCCATTGCTCTCTTGGGTGCTCTTGTTATGCCGCATAACCTCTTCTTACATTCTGCTCTTGTCCTATCAAGAAAAGTTCCAAATTCCGTTCACGGCATCAATCAAGCATGCAGATACTTTTTGGTAGAGAGCGGGTTCGCTTTGCTGGTAGCATTTTTGATCAATGTGGCCGTTGTGTCGGTCTCAGGCACTGTTTGCACTGCCACTAACATCTCTCCATTTACTGCCGATCGTTGTAGTGATATTAACCTCAATTCTGCATCTTTCCTTCTTCAGAATGTTTTGGGGCGATCGAGTTCGAAAATCTATGCAGTAGCATTGCTAGCCTCAGGACAAAGCTCTACAATTACAGGGACTTATGCAGGACAATATATAATGCAGGGTTTTTTGGACCTTAAGATGAGAAAATGGCTAAGGAATTTAATGACAAGGTGTATAGCTATCACACCCAGTTTGATTGTTTCTATTATCGGAGGATCTCAAGGAGCCGGCCGTCTTATCATCATTGCCTCGATGATACTTTCATTTGAACTCCCATTTGCATTAATTCCTCTTCTCAAGTTTAGTAGCAGCACCACCAAGATGGGACCCCACAAAAACTCCATTCATATTATTATTGTATCATGGATTTTAGGGCTAGGGATAATAGGGATCAACATCTACTATCTCAGCACTTCATTTGTGGGTTGGCTAATTCATAGCAGTTTGCCAAAAGTGGCAAATGTGTTCATCGGAATCATCGTCTTCCCATTAATGGCAATCTACATTATTGCAGTCATATATCTGACATTTAGAAAAGATACTGTGGTCACATTCATAGAACCCTTCAAGCAGGATGCTGCTGTGGCACAGGCCCATTTGGAAAGTGGGAGGGCCAGTTCTTTCGTCGGGCCCTGTGAGATTTGCCCAGCCCCTTTCAGACAGGATTTGGCAGATATACCTCTTCCAGAGTAG | 1662 | 44.16 | MASQQQQESRGGGRDTAAFGGGSTTRIAAINIEAFEMTPQEKSVGNDIKPGWRKFLSFVGPGFLVSLAYLDPGNLETDLQAGANHGYELLWVILIGMVFALIIQSLAANLGVSTGKHLSELCKAEYPKFIKYCLWLLAELAVIAADIPEVIGTAFALNILFNIPVWVGVLITGLSTLLLLSLQRYGVRKLEMLITVLVFVMAGCFFGEMSYVKPPAKEVLKGMFVPKLSGQGATGDAIALLGALVMPHNLFLHSALVLSRKVPNSVHGINQACRYFLVESGFALLVAFLINVAVVSVSGTVCTATNISPFTADRCSDINLNSASFLLQNVLGRSSSKIYAVALLASGQSSTITGTYAGQYIMQGFLDLKMRKWLRNLMTRCIAITPSLIVSIIGGSQGAGRLIIIASMILSFELPFALIPLLKFSSSTTKMGPHKNSIHIIIVSWILGLGIIGINIYYLSTSFVGWLIHSSLPKVANVFIGIIVFPLMAIYIIAVIYLTFRKDTVVTFIEPFKQDAAVAQAHLESGRASSFVGPCEICPAPFRQDLADIPLPE | 553 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 2151827 | 2155843 | + | Conep20aG0044700.1 | Cone20ag0432 | 460336 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone20ag0432 | 553 | PRINTS | Natural resistance-associated macrophage protein signature | 347 | 366 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone20ag0432 | 553 | PRINTS | Natural resistance-associated macrophage protein signature | 134 | 160 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone20ag0432 | 553 | PRINTS | Natural resistance-associated macrophage protein signature | 162 | 181 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone20ag0432 | 553 | PRINTS | Natural resistance-associated macrophage protein signature | 237 | 260 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone20ag0432 | 553 | PRINTS | Natural resistance-associated macrophage protein signature | 407 | 426 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone20ag0432 | 553 | PRINTS | Natural resistance-associated macrophage protein signature | 375 | 392 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone20ag0432 | 553 | PRINTS | Natural resistance-associated macrophage protein signature | 187 | 208 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone20ag0432 | 553 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Cone20ag0432 | 553 | Hamap | Divalent metal cation transporter MntH [mntH]. | 41 | 463 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone20ag0432 | 553 | Pfam | Natural resistance-associated macrophage protein-like | 76 | 437 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone20ag0432 | 553 | NCBIfam | metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family | 53 | 429 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone20ag0432 | 553 | NCBIfam | Nramp family divalent metal transporter | 60 | 426 | - | - | |
| Cone20ag0432 | 553 | PANTHER | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER | 43 | 510 | IPR001046 | GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone12ag0154 | Cone-Chr12:785958 | Cone20ag0432 | Cone-Chr20:2151827 | 1.91E-106 | dispersed | |
| Cone20ag0432 | Cone-Chr20:2151827 | Cone6ag1517 | Cone-Chr6:11979193 | 1.19E-208 | dispersed | |
| Cone20ag0432 | Cone-Chr20:2151827 | Cone17ag0270 | Cone-Chr17:1273309 | 4.36E-210 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone20ag0432 | K21398 | - | rcu:8271003 | 840.106 |