Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0433 ATGCCAGCTTCCCCCTCAGATTCCCGGGGCAGGTGGAAGAAGAGGAAGAGAGAGCCTCCAATCAGTCGAAGGCACAACAACAAGCACGAAGAGGAAGAGGAAGACGAAGAATTGGCGGCAGCTGAAAACGACGATGTCGACCACGACAACAATGACGAATACGACGATGCTTCTCACCCTAACCCTAACAATCCTCAATCCACATCAACGCCCGATCCAGATCCTCAGGAGACTGAGATTCTATCGGACGGTGGAGTTCGAATCTCAGACTTCCCTTCGGTGGTCAGGCACGCAGTGAATCGCCCTCACTCATCTGTGCTAGCCATTTCTGCGTTAGAGAGGGCGAATCAGTTTGGAGAGAGTAAGGCTCAGGTAGGAAATACTTTGGTTTTAGAGAATATATCATACGGGCAGCTCCAGGCATTGTCCGCTGTGCCTGCGGATAGTCCAGCCTTGTTGGATCAGGATCGGGCAGATTCCGGAAATGCTGCTTGTGTGGTGGCTCCACCTCCGATTATGGAGGGGCGTGGTGTTGTTAAGCGTTTTGGAAATAGGGTCCATGTGGTTCCTATGCATTCTGATTGGTTCGCACCAGCCACAGTGCATCGGCTCGAGAGACAAGTAGTGCCGCATTTTTTCTCTGGGAAATCACCAGACCACTCGCCGGAAAAATACATGGAATGTAGAAATTACATTGTTGTCAAGTACATGGAGAATCCTGAGAAGAGGCTGACTGTTTCTGATTGTGCTGGTTTGGTTGCTGGTATTGATGATGAAGATTTGATTCGAATTGTTAGGTTTCTTGATCATTGGGGAATTATCAATTACTGTGCTGCAGCACCTAGTCGGGAACCTTGGAATAGTGGTTTCTACTTAAAGGAGGATCTTAATGGTGAGATTCTTGTCCCATCAGCTGCTTTGAAGTCTATCGATAGTTTAGTCAAACTTGACAAGCCCAAATGTAGGCTTAAGCCAGATGATGTTTATTCATCATTATCATGTCGTAAAGGTGATGTCTCTGATTTGGACAACAGTATTCGAGAACATCTATCTGAGAACCATTGCAGTTGTTGTTCTCAGGCCATTCCTATGACCTATTATCAGTCACAGAAGGAGAGTGATGTACTACTATGCTCAACTTGCTTCCATGAGGGCAGATACGTTATTGGTCATTCAAGCATAGACTTTGTAAAGGTGGATCCAGCAAATGATTATGGTGATCTAGATGGTGAAAGTTGGACTGATCAAGAAACCTTACTGCTTCTGGAGGCAGTGGAAATATACCATGAGAACTGGAGTGAAATTGCTGAACATGTTGGGTCCAAGTCCAAAGCACAATGCATTCTTCATTTTCTCCGGTTACCTATGGAGGAAGGTCTCCTGGAGAATGTTGAAGTTCCACACGTGCCCGTGTCATCTAATTCGTTGAGTGGAGATGCAAATGGAAGATTGCATTCAGCTGTGAATGGAGATGTAGCAGGAAATGGTCTTCGTGATGCTGTTGCTGAGAATACGCTCCCTTTTTCCAATTCTGAGAACCCAGTCATGGCCTTGGTTGCCTTTCTAGCTTCTGCTGTTGGACCAAGAGTCGCTGCTGCCTGTGCCCATGCATCTTTAGCAGCATTGTCCGAGGATGATGGCTTATCTGCTTCTGGTAGAATCTTTCAGATTGAAGGTTCAGGACACGGTAATCGGATGAATTTGGAGAGCCTTCATGGAAGAGAAGGTGCCTCCTACAGAGACATTCCTAAGCAACATGCTTCAGATGAGAACATGGAAGAGGCGGATACTTTGTTATCTGCAGAAAGGATCAAAGCTGCGGCGAAGGCTGGCCTTGCTGCTGCAGCAACAAAGGCAAAGTTGTTTGCTGATCATGAAGAACGGGAAATTCAAAGGCTGTCAGCTAACATCATAAATCATCAGCTAAAAAGATTGGAGTTGAAGCTGAAACAATTTGCAGAAGTGGAAACTTTTTTGATGAAAGAATGTGAACAAGTAGAGAGAACGAGACAAAGGATTTTCACCGAGCGAGCCCGAATACTAGCAGCCCAGTTTGGGCCCAGTGGAATCCCTTCATCCATGAATCTACCAGGGCCTGGTCCATCCACGATCAACAATAATACCACAAACAACAGACAACATATGATGTCCAATCCACCTTCTCAGCCAAGCATTTCTGGGTATGGTAACAACAATCAATCAGTTCATCCCAACATTCCCTTTAGACAGCCTATGTTCAGTCTAGGGCCGAGGTTGCCCTTGTCTGCTATACAACCTTCCTCGACTTCTCCAAATGCTATGTTCAATGCCCCAGGAAATTCCGAGCTGGCCCTAAATCATTCGATGATGAGACCCGTTTCGGGTACAAGCTCAGGCTTAGGTTGA 2385 46.21 MPASPSDSRGRWKKRKREPPISRRHNNKHEEEEEDEELAAAENDDVDHDNNDEYDDASHPNPNNPQSTSTPDPDPQETEILSDGGVRISDFPSVVRHAVNRPHSSVLAISALERANQFGESKAQVGNTLVLENISYGQLQALSAVPADSPALLDQDRADSGNAACVVAPPPIMEGRGVVKRFGNRVHVVPMHSDWFAPATVHRLERQVVPHFFSGKSPDHSPEKYMECRNYIVVKYMENPEKRLTVSDCAGLVAGIDDEDLIRIVRFLDHWGIINYCAAAPSREPWNSGFYLKEDLNGEILVPSAALKSIDSLVKLDKPKCRLKPDDVYSSLSCRKGDVSDLDNSIREHLSENHCSCCSQAIPMTYYQSQKESDVLLCSTCFHEGRYVIGHSSIDFVKVDPANDYGDLDGESWTDQETLLLLEAVEIYHENWSEIAEHVGSKSKAQCILHFLRLPMEEGLLENVEVPHVPVSSNSLSGDANGRLHSAVNGDVAGNGLRDAVAENTLPFSNSENPVMALVAFLASAVGPRVAAACAHASLAALSEDDGLSASGRIFQIEGSGHGNRMNLESLHGREGASYRDIPKQHASDENMEEADTLLSAERIKAAAKAGLAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETFLMKECEQVERTRQRIFTERARILAAQFGPSGIPSSMNLPGPGPSTINNNTTNNRQHMMSNPPSQPSISGYGNNNQSVHPNIPFRQPMFSLGPRLPLSAIQPSSTSPNAMFNAPGNSELALNHSMMRPVSGTSSGLG 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2157113 2163195 - Conep20aG0044800.1 Cone20ag0433 460337

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0433 794 Pfam SWIRM-associated region 1 610 683 IPR032451 -
Cone20ag0433 794 FunFam SWI/SNF complex subunit SMARCC2 isoform C 409 459 - -
Cone20ag0433 794 CDD SANT 412 454 IPR001005 -
Cone20ag0433 794 SUPERFAMILY Homeodomain-like 410 458 IPR009057 -
Cone20ag0433 794 MobiDBLite consensus disorder prediction 33 51 - -
Cone20ag0433 794 PANTHER SWI/SNF COMPLEX-RELATED 206 692 - -
Cone20ag0433 794 Pfam SWIRM domain 198 276 IPR007526 GO:0005515(InterPro)
Cone20ag0433 794 MobiDBLite consensus disorder prediction 706 732 - -
Cone20ag0433 794 Coils Coil 623 643 - -
Cone20ag0433 794 ProSiteProfiles Myb-like domain profile. 412 455 IPR001005 -
Cone20ag0433 794 Pfam Myb-like DNA-binding domain 412 453 IPR001005 -
Cone20ag0433 794 Coils Coil 24 44 - -
Cone20ag0433 794 ProSiteProfiles SWIRM domain profile. 187 285 IPR007526 GO:0005515(InterPro)
Cone20ag0433 794 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 407 447 IPR017930 -
Cone20ag0433 794 MobiDBLite consensus disorder prediction 1 81 - -
Cone20ag0433 794 ProSiteProfiles Zinc finger ZZ-type profile. 350 404 IPR000433 GO:0008270(InterPro)
Cone20ag0433 794 MobiDBLite consensus disorder prediction 57 76 - -
Cone20ag0433 794 SUPERFAMILY Homeodomain-like 186 284 IPR009057 -
Cone20ag0433 794 Gene3D - 409 459 - -
Cone20ag0433 794 ProSiteProfiles SANT domain profile. 408 459 IPR017884 -
Cone20ag0433 794 SMART sant 409 457 IPR001005 -
Cone20ag0433 794 Gene3D - 193 280 IPR036388 -
Cone20ag0433 794 FunFam SWI/SNF complex subunit SMARCC2 isoform c 193 281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0433 K11649 - - csv:101220514 1036.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1145 Cone-Chr12:9156142 Cone20ag0433 Cone-Chr20:2157113 2.05E-41 dispersed
Cone20ag0433 Cone-Chr20:2157113 Cone8ag1193 Cone-Chr8:10187211 1.58E-49 dispersed
Cone17ag0826 Cone-Chr17:6618721 Cone20ag0433 Cone-Chr20:2157113 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g235 . Blo12g01124 . Bda03g00015 . Bpe04g00010 Bma04g00014 . . . Cma01g01377 Cma09g00777 . . . Cpe06g00612 . . . . . . . . . . . . . . . . . . Cone20ag0433 Lsi04g02409 Csa04g01782 . . . . . . . . . . Sed06g0997 Cmo01g01428 Cmo09g00769 . . . Car09g00686 . Cpe02g00561 Bhi09g02703 Tan01g4053 Cmetu07g1927 . Hepe01g1595 Mch11g0847 . Cla11g01548 Cam11g1612 Cec11g1641 Cco11g1642 Clacu11g1770 Cmu11g1587 Cre11g2004 . . Chy07g00621 Cme07g00826
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005902 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 1 37