Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0436 ATGACGGAACCGATCACTATCATGGACATCGACGACGACCCGAGCAGCAACGACCAGTCTCTGAAGCCTAGTAAGGGCAAACACGTCGTAGTCTCTGCCACTTCGCCTGACGGCAAGGCCACCCTTTGGGTCAAGAAGTACCGCCCTCAGTCCCTCGATGACGTCGCCGCCCACCGTGACATTGTTGATACGATTGACAGGTTGACCGGTGAGAACATGTTGCCACGTCTCTTGTTGTATGGCCCACCTGGTACTGGTAAAACCTCGACTATTCTCGCTGTTACACGGAAGCTCCATGGATCATGCTACCACAATATGATATTGGAGCTGAATGCATCAGATGATAGGGGGATCGATGTCGTTAGGCAACAGATTCAAGATTTTGCTAGTACTCAAATCTTCTCATTTGGGGCAAAGGCTGCTGTGAAATTGGTATTATTAGATGTGGCAGATGCCATGACAAAAGATGCTCAATTTGCCTTGCGTAGAGTGATCGAGAAGTATATAAAGAGCACAAGATTTGCTCTTATCTGCAATCATGTCAATAAGATCATTCCAGCCCTAGTCAAGCTAATTTATGTTGGGCTTGATGTTCCTGAAAGTGGCTTAGCGGCACTTGTTCGGCTCAGCAGTGGTGACATGAGAAAGGCTTTGAATATCTTGCAGGTGTGGTTTTATCTAAGTTTTTTAGAGCATGGTCAACGCATATGGCTTCACAGTAGATATCAGAAGAAGCTATATACCTGTGCACTGGAAACCCAATGCCCAAAGACAGAGAAAATATCTTACTGGTTTCTGAATGAAACATTTGCAGAGAGCTTCAAAAGAATATCTGAAAGGAAGGCACGCAAAGGGTTGGCTCTGGTTGATATCGTAAGAGAAGTGAATATGTGA 894 45.53 MTEPITIMDIDDDPSSNDQSLKPSKGKHVVVSATSPDGKATLWVKKYRPQSLDDVAAHRDIVDTIDRLTGENMLPRLLLYGPPGTGKTSTILAVTRKLHGSCYHNMILELNASDDRGIDVVRQQIQDFASTQIFSFGAKAAVKLVLLDVADAMTKDAQFALRRVIEKYIKSTRFALICNHVNKIIPALVKLIYVGLDVPESGLAALVRLSSGDMRKALNILQVWFYLSFLEHGQRIWLHSRYQKKLYTCALETQCPKTEKISYWFLNETFAESFKRISERKARKGLALVDIVREVNM 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2179466 2182188 - Conep20aG0045100.1 Cone20ag0436 460340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0436 297 CDD AAA 57 188 - -
Cone20ag0436 297 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 195 294 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Cone20ag0436 297 SMART AAA_5 73 200 IPR003593 GO:0016887(InterPro)
Cone20ag0436 297 MobiDBLite consensus disorder prediction 1 27 - -
Cone20ag0436 297 Gene3D - 36 193 IPR027417 -
Cone20ag0436 297 Pfam ATPase family associated with various cellular activities (AAA) 77 189 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone20ag0436 297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 232 IPR027417 -
Cone20ag0436 297 Gene3D - 256 297 - -
Cone20ag0436 297 Gene3D - 194 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0436 Cone-Chr20:2179466 Cone4ag1422 Cone-Chr4:11344487 8.45E-41 dispersed
Cone17ag1292 Cone-Chr17:9251825 Cone20ag0436 Cone-Chr20:2179466 2.72E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0436 K10756 - mdm:103441543 373.629