Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone20ag0436 | ATGACGGAACCGATCACTATCATGGACATCGACGACGACCCGAGCAGCAACGACCAGTCTCTGAAGCCTAGTAAGGGCAAACACGTCGTAGTCTCTGCCACTTCGCCTGACGGCAAGGCCACCCTTTGGGTCAAGAAGTACCGCCCTCAGTCCCTCGATGACGTCGCCGCCCACCGTGACATTGTTGATACGATTGACAGGTTGACCGGTGAGAACATGTTGCCACGTCTCTTGTTGTATGGCCCACCTGGTACTGGTAAAACCTCGACTATTCTCGCTGTTACACGGAAGCTCCATGGATCATGCTACCACAATATGATATTGGAGCTGAATGCATCAGATGATAGGGGGATCGATGTCGTTAGGCAACAGATTCAAGATTTTGCTAGTACTCAAATCTTCTCATTTGGGGCAAAGGCTGCTGTGAAATTGGTATTATTAGATGTGGCAGATGCCATGACAAAAGATGCTCAATTTGCCTTGCGTAGAGTGATCGAGAAGTATATAAAGAGCACAAGATTTGCTCTTATCTGCAATCATGTCAATAAGATCATTCCAGCCCTAGTCAAGCTAATTTATGTTGGGCTTGATGTTCCTGAAAGTGGCTTAGCGGCACTTGTTCGGCTCAGCAGTGGTGACATGAGAAAGGCTTTGAATATCTTGCAGGTGTGGTTTTATCTAAGTTTTTTAGAGCATGGTCAACGCATATGGCTTCACAGTAGATATCAGAAGAAGCTATATACCTGTGCACTGGAAACCCAATGCCCAAAGACAGAGAAAATATCTTACTGGTTTCTGAATGAAACATTTGCAGAGAGCTTCAAAAGAATATCTGAAAGGAAGGCACGCAAAGGGTTGGCTCTGGTTGATATCGTAAGAGAAGTGAATATGTGA | 894 | 45.53 | MTEPITIMDIDDDPSSNDQSLKPSKGKHVVVSATSPDGKATLWVKKYRPQSLDDVAAHRDIVDTIDRLTGENMLPRLLLYGPPGTGKTSTILAVTRKLHGSCYHNMILELNASDDRGIDVVRQQIQDFASTQIFSFGAKAAVKLVLLDVADAMTKDAQFALRRVIEKYIKSTRFALICNHVNKIIPALVKLIYVGLDVPESGLAALVRLSSGDMRKALNILQVWFYLSFLEHGQRIWLHSRYQKKLYTCALETQCPKTEKISYWFLNETFAESFKRISERKARKGLALVDIVREVNM | 297 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 2179466 | 2182188 | - | Conep20aG0045100.1 | Cone20ag0436 | 460340 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone20ag0436 | 297 | CDD | AAA | 57 | 188 | - | - | |
Cone20ag0436 | 297 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 195 | 294 | IPR050238 | GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER) | |
Cone20ag0436 | 297 | SMART | AAA_5 | 73 | 200 | IPR003593 | GO:0016887(InterPro) | |
Cone20ag0436 | 297 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Cone20ag0436 | 297 | Gene3D | - | 36 | 193 | IPR027417 | - | |
Cone20ag0436 | 297 | Pfam | ATPase family associated with various cellular activities (AAA) | 77 | 189 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Cone20ag0436 | 297 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 41 | 232 | IPR027417 | - | |
Cone20ag0436 | 297 | Gene3D | - | 256 | 297 | - | - | |
Cone20ag0436 | 297 | Gene3D | - | 194 | 250 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone20ag0436 | Cone-Chr20:2179466 | Cone4ag1422 | Cone-Chr4:11344487 | 8.45E-41 | dispersed | |
Cone17ag1292 | Cone-Chr17:9251825 | Cone20ag0436 | Cone-Chr20:2179466 | 2.72E-150 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone20ag0436 | K10756 | - | mdm:103441543 | 373.629 |