Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0439 ATGGCTGCTTCTTCCTACTCGTATCGCCTTCTCTCCTCAGCTAACAAAGCTACTCCCTCACTCTCTTCATCTTCTTCACGCTCCTTCTTCTCTGCCACTTCCTCTTCTCTCAAATGTCTCAGATCGTCTCCTCTCATTTCCCACCTTTTCATCTCCAATCAGATAAGACCTACTGGCTGTGTGTTAGATAGAGGTTTCAGCTCAGTCTCTACTCCCAAATGCTCGGCGGATCTTGAGCAGTTGAAGAGCGCCAGAGAAGACATCAAGGATATCTTGAAGACGAACTTCTGCCATCCTATTCTGGTGCGCTTGGGTTGGCATGATGCCGGTACCTATAACAAAAACATTGAGGAGTGGCCAAGGAGAGGTGGAACTAATGGGAGTCTGAGATTTGATATTGAGCTAAAACATGCAGCAAATGCGGGTCTTGTGAATGCATTGAAACTTCTTCAGCCTATCAAAGAGAAGTATTCTAACGTGACTTATGCAGACTTGTTCCAGTTAGCTAGTGCTACTGCTATTGAGGAGGCAGGGGGGCCCAAAATTCCTATGAAGTATGGAAGAGTAGATGTCTCTGGGCCGGAACAATGCCCAGAAGAGGGGAGGCTTCCTGCTGCTGGTCCCCCATCACCTGCTGACCATCTACGAGAAGTTTTCTATAGAATGGGATTGAATGACAAGGAAATAGTTGCATTATCTGGTGCACACACATTGGGAAGATCCAGACCAGAGCGCAGTGGCTGGGGAAAGCCAGAAACCAAGTATACGAAAGATGGACCTGGAGCTCCTGGAGGACAATCCTGGACAGTGCAGTGGTTGAAGTTTGATAACTCCTACTTCAAGGATATCAAAGAAAGAAAGGATGCCGAACTGCTGGTCTTGCCAACTGATGCTGTTCTTTTCGAAGATCCATCATTCAAGGTCTATGCGGAGAAATACGCAGAAGACCAGGAAGCATTCTTCAAGGATTATGCTGAAGCACATGCCAAACTAAGCAACCTTGGAGCCAAATTTGATCCTCCAGAGGGTATTGTAATAGACAATTAA 1047 46.42 MAASSYSYRLLSSANKATPSLSSSSSRSFFSATSSSLKCLRSSPLISHLFISNQIRPTGCVLDRGFSSVSTPKCSADLEQLKSAREDIKDILKTNFCHPILVRLGWHDAGTYNKNIEEWPRRGGTNGSLRFDIELKHAANAGLVNALKLLQPIKEKYSNVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPADHLREVFYRMGLNDKEIVALSGAHTLGRSRPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKERKDAELLVLPTDAVLFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSNLGAKFDPPEGIVIDN 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2210392 2213788 + Conep20aG0045400.1 Cone20ag0439 460343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0439 348 Gene3D Peroxidase, domain 2 206 329 - -
Cone20ag0439 348 FunFam L-ascorbate peroxidase S chloroplastic/mitochondrial 84 208 - -
Cone20ag0439 348 PRINTS Plant ascorbate peroxidase signature 159 177 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone20ag0439 348 PRINTS Plant ascorbate peroxidase signature 178 190 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone20ag0439 348 PRINTS Plant ascorbate peroxidase signature 77 97 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone20ag0439 348 PRINTS Plant ascorbate peroxidase signature 98 113 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone20ag0439 348 PRINTS Plant ascorbate peroxidase signature 297 321 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone20ag0439 348 MobiDBLite consensus disorder prediction 238 263 - -
Cone20ag0439 348 PRINTS Haem peroxidase superfamily signature 268 283 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone20ag0439 348 PRINTS Haem peroxidase superfamily signature 160 177 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone20ag0439 348 PRINTS Haem peroxidase superfamily signature 178 190 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone20ag0439 348 PRINTS Haem peroxidase superfamily signature 98 112 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone20ag0439 348 PRINTS Haem peroxidase superfamily signature 228 243 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone20ag0439 348 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 62 343 IPR044831 GO:0000302(PANTHER)|GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0034599(PANTHER)|GO:0034599(InterPro)|GO:0042744(PANTHER)
Cone20ag0439 348 FunFam L-ascorbate peroxidase T, chloroplastic 206 329 - -
Cone20ag0439 348 Pfam Peroxidase 85 316 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone20ag0439 348 Gene3D - 84 337 - -
Cone20ag0439 348 CDD ascorbate_peroxidase 74 339 - -
Cone20ag0439 348 ProSitePatterns Peroxidases proximal heme-ligand signature. 228 238 IPR019793 -
Cone20ag0439 348 ProSiteProfiles Plant heme peroxidase family profile. 101 348 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone20ag0439 348 SUPERFAMILY Heme-dependent peroxidases 78 337 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0439 K00434 - - csv:101216755 563.533
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0439 Cone-Chr20:2210392 Cone6ag1693 Cone-Chr6:12804155 4.91E-72 dispersed
Cone17ag1289 Cone-Chr17:9235089 Cone20ag0439 Cone-Chr20:2210392 4.06E-196 wgd
Cone20ag0439 Cone-Chr20:2210392 Cone4ag1416 Cone-Chr4:11323664 5.62E-35 wgd
Cone20ag0439 Cone-Chr20:2210392 Cone7ag1522 Cone-Chr7:10566661 1.92E-195 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g248 . . . . . . . . Cmo04g02484 Cmo15g00678 . . . . Sed01g3111 . . Bhi04g01899 Tan11g1263 Cmetu03g1741 . Hepe02g2244 . . Cla08g00603 Cam08g1017 Cec08g0607 Cco08g0718 Clacu08g0728 . Cre08g0536 . Cone7ag1522 Cone17ag1289 Cone20ag0439 . . . Cme03g00534 Blo17g00174 . . Bda13g01479 Bpe02g01647 Bpe14g00386 Bma01g00808 Bma02g00215 . . . . . Car04g02298 Car15g00616 Cpe01g02059 . . . . . . . . . . . . . . . Lsi08g00443 . Chy03g00786 .
Vvi18g1088 . Blo12g00889 . Bda03g00284 . Bpe04g00241 Bma04g00241 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1394 Cone20ag0439 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003748 3 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 4 1 1 46