Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0442 ATGAATTTTTTCAAAATATTAACCGTCGTATGCACGATTATAACTCCAGATTTGTTAATCTCAACCGTAGAGCCAATAACTATTCCGGATGATCAAGACCGTTCGTCTTTCTTCGATCCGAACAGCATATTAAAACCCAGCTCCGGCTCAAACGAGAAAAAAAATCTGAGTCTCGGACTCATAGCGTCATCGGCGGCTCAGTCGTCTGAGACTAGTCCGAGCTGCGAGGTCTGGACAGATGCTTGCTCTGAAGCCGTCCTGAGCTTAGCGAAACGGCGGGACACGATTGACTGGATTAAGCGAGTGAGGAGAAAGATCCATGAGAATCCAGAGCTTGCTTTCGAAGAATTTGAAACGAGTCAGCTCGTTCGTGACGAGTTGGACCTCATGGATGTTAGTTATACGTTTCCGATGGCCGTCACCGGCGTCAGAGCCTGGATCGGGACCGGCCGTCCTCCTTTTGTCGCCCTAAGAGCTGATATGGATGCTCTTCCGATTCAGGAAGCTGTGGAATGGGAGCACAAGAGCAAAGTTGCAGGCAAAATGCATGCGTGTGGGCACGATGCACATGTCGCCATGCTTATCGGAGCGGCTAAGATCTTGAAAACTCGTGAATATCTTCTCAAGGGTACTGTCATTCTCATCTTTCAACCAGCAGAGGAAGCAGGAAATGGGGCAAAGCGAATGATCAAAGACGGAGCCTTAGAAGATGTGGAAGCTATATTTGCAGCACATGTATCCCATGAACATCCCACAGGAATCATCGGGTCAAGGCCTGGTCCCTTACTCGCAGGCTGCGGTTTCTTCAGGGCTGTAATAACCGGAAAGATGGGTCGGGCCGGGAATCCTCACCGCTCTGTTGACCCAGTTTTGGCGGCTTCGGCAGCAGTCATCAGCTTACAGGGCATTGTCTCTCGAGAGGCTAATCCACTAGACTCTCAGGTTGTATCTGTGACATCATTTAATGGAGGCAATAATCTCGATATGATACCAGACTCAGTAACTATTGGCGGTACCTTCCGAGCATTCTCCAACCCCTACCACTTGCTCCAAAGAATAAAAGAGGTAATCATAGAGCAGGCCAGTGTATACAGATGCTCAGCATCTATTGACTTCTTTGAAAACGAGTACACATTATATCCTCCAACTGTAAACGATGAGAAAATGTACGAGCATGTCACGAAGGTGGCGGTCGAATTGCTGGGCCCGAAGAATTTCCGGGTGGTCCCACCAATGATGGGTGCCGAGGACTTCTCGTTCTACTCACAGGTTGTCCCTGCTGCTTTCTTCTACATAGGAGTTAGGAATGAAACTCTAGGATCTATACATACGGGTCATTCGCCATATTTCATGATCGATGAAGATGCTCTTCCTATTGGAGCGGCAACTCATGCTACTATTGCTGAGAGATATTTAAATGAACATTGCTGA 1431 47.87 MNFFKILTVVCTIITPDLLISTVEPITIPDDQDRSSFFDPNSILKPSSGSNEKKNLSLGLIASSAAQSSETSPSCEVWTDACSEAVLSLAKRRDTIDWIKRVRRKIHENPELAFEEFETSQLVRDELDLMDVSYTFPMAVTGVRAWIGTGRPPFVALRADMDALPIQEAVEWEHKSKVAGKMHACGHDAHVAMLIGAAKILKTREYLLKGTVILIFQPAEEAGNGAKRMIKDGALEDVEAIFAAHVSHEHPTGIIGSRPGPLLAGCGFFRAVITGKMGRAGNPHRSVDPVLAASAAVISLQGIVSREANPLDSQVVSVTSFNGGNNLDMIPDSVTIGGTFRAFSNPYHLLQRIKEVIIEQASVYRCSASIDFFENEYTLYPPTVNDEKMYEHVTKVAVELLGPKNFRVVPPMMGAEDFSFYSQVVPAAFFYIGVRNETLGSIHTGHSPYFMIDEDALPIGAATHATIAERYLNEHC 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2235493 2239299 - Conep20aG0045700.1 Cone20ag0442 460346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0442 476 SUPERFAMILY Bacterial exopeptidase dimerisation domain 264 381 IPR036264 -
Cone20ag0442 476 NCBIfam amidohydrolase 101 460 IPR017439 GO:0016787(InterPro)
Cone20ag0442 476 SUPERFAMILY Zn-dependent exopeptidases 93 474 - -
Cone20ag0442 476 PANTHER PEPTIDASE M20 FAMILY MEMBER 80 475 IPR017439 GO:0005783(PANTHER)|GO:0009694(PANTHER)|GO:0009850(PANTHER)|GO:0010179(PANTHER)|GO:0016787(PANTHER)|GO:0016787(InterPro)
Cone20ag0442 476 FunFam N-acetyldiaminopimelate deacetylase 264 380 - -
Cone20ag0442 476 CDD M20_IAA_Hyd 99 472 IPR044757 GO:0009850(InterPro)|GO:0016787(InterPro)
Cone20ag0442 476 Gene3D Zn peptidases 101 465 - -
Cone20ag0442 476 Pfam Peptidase family M20/M25/M40 156 469 IPR002933 GO:0016787(InterPro)
Cone20ag0442 476 Gene3D - 264 381 - -
Cone20ag0442 476 Pfam Peptidase dimerisation domain 269 357 IPR011650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0442 K21604 - - csv:101215789 710.679
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0442 Cone-Chr20:2235493 Cone5ag0740 Cone-Chr5:3189171 1.34E-140 dispersed
Cone7ag1200 Cone-Chr7:8922968 Cone20ag0442 Cone-Chr20:2235493 5.61E-168 transposed
Cone17ag1285 Cone-Chr17:9219572 Cone20ag0442 Cone-Chr20:2235493 1.03E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g253 . . . . . . . . Cmo04g02477 Cmo15g00685 . . . . Sed01g3120 . . Bhi04g01905 Tan11g1268 Cmetu03g0844 . Hepe02g2259 . Lcy10g1230 Cla08g00599 Cam08g1012 Cec08g0603 Cco08g0713 Clacu08g0724 . Cre08g0533 . . . Cone20ag0442 . . . Cme03g00543 Blo17g00176 . . Bda13g01480 . Bpe14g00384 . Bma02g00217 . . . . . Car04g02294 Car15g00620 Cpe01g02055 . . . . . . . . . . . . . . . Lsi08g00440 . Chy03g00792 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008544 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 35