Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0443 ATGTCTTCTCATTCTGAGAGATTTTCCGATGATCAGGAGCCCTCCATGGCATCTCCAAATCATGAAAATGGATTTGATCTTGAAGTAACCTCAAAACCTGCGGCCGGTAAAGACGATATTGATGATAATTTGTCGGAAAAGGAAGATACTCGTACCAATAGTCTTAGAATTCTAAGTCAGAAATTATCAGCTGCTCTTGTGAATGTTAGTGCCAAAGAAGACCTTGTCAAACAACATTCTAAAGTTGCAGAAGAAGCCATTGCAGGGTGGGAAAAGGCTGAGAATGAAGTCAAGATATTGAAACAACACCTCGGAGCTTCAATCCAGCAAAAATCAGCCCTGGAAGACAAGGTGGGCCATCTAGACACAGCCCTGAAAGAATGTGTTAGGCAGTTAAGACAAGTAAGAAACGAGCAAGACCAAAAAATCCAAGAAGCAGTGCTCGAAAACACCCTAAACTTCAAAGAGACTAAATTAGAACTTGAACGGAAGCTTCTAGATCTTCAAATGAAACTAGATGCCTCTCAATCTGAGTCTCCTCGGAAATTCGAATCCTTGAGAAGGGAAAACTCTGCTCTAAGACTTGAGCTATGTGCTCAAGCTGAAGAACTAGAGATCAGAACGATAGAATGTGATTTGAGCACCCGAGCAGCCGAAATGGCTAGCAAGCAACAGCTAGAGAGCATAAAGAAGGTGGCTAAGCTTGAGGCAGAGTGTAGAAAGCTAAAATCAATGGCATTCAAATCACCATCGATTAATATCGAGTCTGTTAGTGATAGTCAATCAGATGGTGGAGAGCAGCATCGGTTAAAGGCGTTGATCGCTGAGCTTGATCAATGCAAGGTCGATAGGAACCTTCTGTCTTCTTCTTCTGTTGAAATCAATTTAATGGACGATTTTCTCGAAATGGAGCGGCTTGCTGCATTGCATGATTCTAATGGTGGGCCCTGTCAGTTAGAAGAATCTGAGCTCGGTACAGGTCCAACTGCTAGTGAAGAAAGTTGTTTGAGAGCTGAGCTGGAAGAGAAGTTGGAGAAGATGGAATATGAGAAAACTGAATTGGAAGAGAAGTTGGAGAAGATGGAATATGAGAAAACTGAATTGGAAGAGAAATTGGAAAAGATGGAATATGAGAAAACTGAATTGGAAGAGAAATTGGAGAAGATGGAATATGAAAAAAATGAATTGGATGAGAAGTTGGAGGAGATGGAATATGAGAAAAGTGAATTGGAAGAGAAGTTGGAGAAGATGGAATATGAGAAAAGTGAATCGGAAGAGAAGATGGTGAGGATGGAAGAAGAGAAAAGTGAATTGGGAGTGGCGATAGAGAAAATGGAGGAGGAGAAGAAAGAACTCGAGAGTGCTCTGATCAAAAGCCGACACTGTTTTGATTTATCAGAAGCTCAAGGGAAGGAGGCGGAAGTGAAAGCGGAGGAGATGAAGATCGAGTTGGTTAAGGCGAATGAATTGAAGGGAAGTATGGAAGGTAAGCTTGCTGCCATGGAAGTAGAAGCTCGGGCCATGTCGAAAAAAGTTAGTACGTTAGAGTTGGAGATTGCAAAGGAGAGGGCTTCTTCCATGGAAATTGCAGTCAAGTGTGGAGAATTAGAGGAAGAGGTATTGAAATTGAAGGAAGAAGAGAAGATTCGCCAAACTGCAGTTTCAAATAATGAGCATAAGGTGAAGCAGGAGGAACTGGCGGTAGCAGCAGGGAAACTAGCAGAGTGCCAGAAAACGATAGCATCTCTCGGAAATCAACTGAGATGTCTAGCAAGTTTAGAGGATTTCTTGATCGATACTCCGATTTTACCGGACTCATCGACTAGAGCTGGTGGCGAGGATCATCAATTGAAGAACGACTGTAAATTAACTTTTTCACCTGAAAGAGATTCTGATTCTTCTTCAAGATTCATTGATGAAGTCTCCCCGCCATCTTCGTCTTCATCATCAGCTTGCTCTGCACTGGTTTCGAGTGTCAGTTCTGAGAAGAATCGTAATGGATTTGCTAAATTCTTCTCTAGAACCAAGAGTGGAATTCGACTAGAAATTTAG 2052 41.96 MSSHSERFSDDQEPSMASPNHENGFDLEVTSKPAAGKDDIDDNLSEKEDTRTNSLRILSQKLSAALVNVSAKEDLVKQHSKVAEEAIAGWEKAENEVKILKQHLGASIQQKSALEDKVGHLDTALKECVRQLRQVRNEQDQKIQEAVLENTLNFKETKLELERKLLDLQMKLDASQSESPRKFESLRRENSALRLELCAQAEELEIRTIECDLSTRAAEMASKQQLESIKKVAKLEAECRKLKSMAFKSPSINIESVSDSQSDGGEQHRLKALIAELDQCKVDRNLLSSSSVEINLMDDFLEMERLAALHDSNGGPCQLEESELGTGPTASEESCLRAELEEKLEKMEYEKTELEEKLEKMEYEKTELEEKLEKMEYEKTELEEKLEKMEYEKNELDEKLEEMEYEKSELEEKLEKMEYEKSESEEKMVRMEEEKSELGVAIEKMEEEKKELESALIKSRHCFDLSEAQGKEAEVKAEEMKIELVKANELKGSMEGKLAAMEVEARAMSKKVSTLELEIAKERASSMEIAVKCGELEEEVLKLKEEEKIRQTAVSNNEHKVKQEELAVAAGKLAECQKTIASLGNQLRCLASLEDFLIDTPILPDSSTRAGGEDHQLKNDCKLTFSPERDSDSSSRFIDEVSPPSSSSSSACSALVSSVSSEKNRNGFAKFFSRTKSGIRLEI 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2251960 2255889 - Conep20aG0045800.1 Cone20ag0443 460347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0443 683 Pfam Filament-like plant protein, long coiled-coil 72 179 IPR008587 -
Cone20ag0443 683 Pfam Filament-like plant protein, long coiled-coil 424 592 IPR008587 -
Cone20ag0443 683 Pfam Filament-like plant protein, long coiled-coil 182 245 IPR008587 -
Cone20ag0443 683 MobiDBLite consensus disorder prediction 313 332 - -
Cone20ag0443 683 Coils Coil 125 149 - -
Cone20ag0443 683 Gene3D - 331 411 - -
Cone20ag0443 683 Coils Coil 330 462 - -
Cone20ag0443 683 Coils Coil 468 490 - -
Cone20ag0443 683 Coils Coil 158 178 - -
Cone20ag0443 683 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 434 - -
Cone20ag0443 683 MobiDBLite consensus disorder prediction 32 50 - -
Cone20ag0443 683 MobiDBLite consensus disorder prediction 623 651 - -
Cone20ag0443 683 MobiDBLite consensus disorder prediction 1 50 - -
Cone20ag0443 683 Coils Coil 498 518 - -
Cone20ag0443 683 MobiDBLite consensus disorder prediction 637 651 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0443 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0443 Cone-Chr20:2251960 Cone4ag1962 Cone-Chr4:13807279 1.65E-23 dispersed
Cone17ag1283 Cone-Chr17:9212551 Cone20ag0443 Cone-Chr20:2251960 2.90E-268 wgd
Cone20ag0443 Cone-Chr20:2251960 Cone6ag1232 Cone-Chr6:9803174 5.64E-42 wgd
Cone20ag0443 Cone-Chr20:2251960 Cone7ag1530 Cone-Chr7:10594933 8.31E-111 wgd
Cone20ag0443 Cone-Chr20:2251960 Cone9ag1211 Cone-Chr9:8780177 1.19E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g262 . Blo12g00890 . Bda03g00283 . . Bma04g00240 . Cmo04g02471 . . . . . . Cpe06g00076 . . . . . . . . Cla08g00588 Cam08g1003 Cec08g0593 Cco08g0702 Clacu08g0712 . Cre08g0523 . Cone7ag1530 Cone17ag1283 Cone20ag0443 Lsi04g01729 . . . . Blo18g00184 . . . . . . . . . . . Car04g02288 Car09g00102 Cpe01g02050 . . . . . . . . . . . . . . . Lsi08g00434 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023754 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 2