Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0450 ATGGCGGAGGAAGCGCAAGAAAACTATACGCCTAAGAGTGATGTGAAGGAGGAAGCAGCAACGCACGATATCGAATCGCAGATTCAGATTGCCATGCGGTCCAGGGTTTCTTACTTCAAGGAGCAAGCCGATTCTTTAACTCTTGAGAAGGTGAGGAGGCTGTTAGAGAAAGACTTGGGTTTGGAAATTTATGCTTTAGATAAGCATAAGAGATATATCAAGCAGGGCTTGGAGAAGTGCTTAGATGGTTCCCATGACACTGATGCTTCAAAGAATTCTGTGGAGACTGGTGGAGAAAGGATAAGAAAAGGAGATGCAGCTGAATCACTAGAAGAGCATCAGTTGAAGAAAGACGTAAAAGAACCTTGCTTGGAAGATGAAGAGAAAACAAAAGACTCTCCAGTGATGGGTCTTCTGACAGGACATAAACAGGCAAAACTGAGTACTGAGGAAATAAAAAACAGTGACAGAAAAGGAGTGCCAAGTGAAATCACAATAATGAAAGCAATTAAAAAAAGAGCTTCTTACTTCAAAGCCAATTCAGATAAAGTAACTATGACTGAAGTTCGCCGCCTTTTGGAGAACGACCTTAAACTTGATGAACATTCACTTGATACCTGTAAGAAGCTAATATCTCAGCATGTAGAGGAGATATTAAGTTCTTCTGAAGTCTCTAAATCTGCTCCTGTTGCCAAGAAAAAATCTGATTCCAGAGCATCTAAAAAGGTTAGCAGCAAAGAGAGTTCTGATTCTGCTGACAGTGAAAGTGATGAGGAAGAAGGCGATGAAGAGAAACCTAAAAAGAGAACTACTCCAATAGGGAAAATGCAGAAATCTGATGGCCTTAAAAAACGGAAAAGACCCACGGAAGAAACTGTCCCTGTAAAGAAGCAGAGCAAGTCCGCGCGACCGGTAGTAGAGGATGATAGTGATGAAGATGGTCACTCTCAGTCATCTGGTGAAAAACCTGTCAAGAAGAAAGAAGTTTCAACTCCAGCCTATGGCAAACGTGTGGAGCACCTAAAATCGGTTATCAAGTCATGTGGGATGAGCGTACCCCCCTCAGTGTACAAGAAAGTAAAGCAGGTACCTGAAAATAAACGTGAATCCCAATTAATTGAGGAGTTAGAGGAGATACTCTCTAAAGAGGGATTATCTTCAAACCCTTCTGAAAAAGAAATTAAGGAAGTGAAGAAGAAAAAGGAAAGGGCAAAGGAACTTGAGGGCATTGACACTAGTAATATTGTATCAAGCTCAAGAAGAAGGTCCACAACTAGCTTTGTACCACCTCCAAAGCCGAAGATGGAAGTTGAAAGTGATAATGATGATTCTGAAGAAGAAGAAGATGATGATGATGATGATGATGACGACGATGACGAGGAGGTCGATGAAGACAATGACAACAATGAAGAGGATGAAGATGTAGAAGATAACGGTGATGGTAGCCAAAGCGAAGATGGAGTTAACGAGGGAGCAGCAATAGCAGCACCTACCATGGCTGGTCGTCATCTTGGCTCTGCACTTCTTCTCAGCAGTCTCTTTCTCTCATTTTCTCTCCTCCTCTGCCATCCGGAAAACGACGTCGTAGAAGAACAAGAAGAAGACTCCCCCATCACTCGCTTCCAACAGTACCTCAGAATCAACACCGCCCACCCCAACCCTGACTACAGTGCCGCCGTCTCCTTCCTCGAATCTCAAGCTCACTCTCTTGGCCTCCCAACCCTAACCCTTCAATACAATACAGTAAAACCACTCCTCGTCGTAACTTGGCGCGGGTCAAACCCCGACCTTCCCTCCGTTCTGTTCAACTCGCACATCGATTCCGTCCCGGCCGAATCTTCTAAGTGGATCTACCCTCCCTTTGCCGCCGTCCGATCCTCCGACGGTAAAATCTTCGCCCGCGGCTCCCAAGATGATAAATGCATCGGCGTCCAGTACATCGAGGCCATACGAAACCTCAAACGTAGAAACTTCAAACCCGTCCGTACGATTCACTTGTCGTACGTCCCGGACGAGGAGATCGGAGGATCCGATGGGGCTAAGAAATTCGTTGAATCGATCGAGTTCAAGAACTTGAACGTCGGATTTGTGATGGACGAAGGCCAGGCATCGCCTGGAGATGAATTTAGAGTTTTCTACGCTGATAGGACGCCATGGGATTTGATTATTAGGGCCAAAGGAACTCCTGGACATGGTTCTAGAATGTATGATAATAGCGCAATGGAGAATTTGATGAAGAGCATCGAGGCCGTGATGACATTCAGAGAGAGCCAGTTTGACATTGTCAAGGCTGGTGAAGCAGCCAATTCCGAGGTCATATCGGTTAATCCCGTTTATATGAATGCTGGAATTCCTTCTCCTACCGGATTTGTGATGAACATGCAACCTTCAGAGGCGGAGGCAGGATTTAATATTCGGTTGCCACCTATGGCCGATCCTGATCTTATTAGGAGAAGAATTGCTGAAGAATGGGCACCTGCTCGGCGAAACATAACATTTCAAATAATTGAGAAGGGGCCGACAAGGGACAACATGGGTCACCCATTAATCACACCCACCAATGATTCCAACCCATGGTGGTCCGTTTTTCACAAAGCCGTCTCGGACTCCGGAGGAAAGCTTTCAAAGCCCGAAATACTGGCTTCGACTACTGATGCCCGGTATATAAGACAGTTGGGAATCCCTGCACTCGGTTTCTCTCCCATGATTAATACTCCTATCTTACTCCATGATCATAATGAGTTCTTGAAAGATACCACATTTTTGAATGGCATAAAGGTTTATGAATCCATAATCAGTGCTCTGAGTTCTTTCCAGGAGGCAGCCTCCGAGTAA 2835 45.04 MAEEAQENYTPKSDVKEEAATHDIESQIQIAMRSRVSYFKEQADSLTLEKVRRLLEKDLGLEIYALDKHKRYIKQGLEKCLDGSHDTDASKNSVETGGERIRKGDAAESLEEHQLKKDVKEPCLEDEEKTKDSPVMGLLTGHKQAKLSTEEIKNSDRKGVPSEITIMKAIKKRASYFKANSDKVTMTEVRRLLENDLKLDEHSLDTCKKLISQHVEEILSSSEVSKSAPVAKKKSDSRASKKVSSKESSDSADSESDEEEGDEEKPKKRTTPIGKMQKSDGLKKRKRPTEETVPVKKQSKSARPVVEDDSDEDGHSQSSGEKPVKKKEVSTPAYGKRVEHLKSVIKSCGMSVPPSVYKKVKQVPENKRESQLIEELEEILSKEGLSSNPSEKEIKEVKKKKERAKELEGIDTSNIVSSSRRRSTTSFVPPPKPKMEVESDNDDSEEEEDDDDDDDDDDDEEVDEDNDNNEEDEDVEDNGDGSQSEDGVNEGAAIAAPTMAGRHLGSALLLSSLFLSFSLLLCHPENDVVEEQEEDSPITRFQQYLRINTAHPNPDYSAAVSFLESQAHSLGLPTLTLQYNTVKPLLVVTWRGSNPDLPSVLFNSHIDSVPAESSKWIYPPFAAVRSSDGKIFARGSQDDKCIGVQYIEAIRNLKRRNFKPVRTIHLSYVPDEEIGGSDGAKKFVESIEFKNLNVGFVMDEGQASPGDEFRVFYADRTPWDLIIRAKGTPGHGSRMYDNSAMENLMKSIEAVMTFRESQFDIVKAGEAANSEVISVNPVYMNAGIPSPTGFVMNMQPSEAEAGFNIRLPPMADPDLIRRRIAEEWAPARRNITFQIIEKGPTRDNMGHPLITPTNDSNPWWSVFHKAVSDSGGKLSKPEILASTTDARYIRQLGIPALGFSPMINTPILLHDHNEFLKDTTFLNGIKVYESIISALSSFQEAASE 944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2294276 2300172 + Conep20aG0046500.1 Cone20ag0450 460354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0450 944 MobiDBLite consensus disorder prediction 440 483 - -
Cone20ag0450 944 MobiDBLite consensus disorder prediction 388 409 - -
Cone20ag0450 944 FunFam Aminoacylase-1, putative 857 938 - -
Cone20ag0450 944 MobiDBLite consensus disorder prediction 81 114 - -
Cone20ag0450 944 NCBIfam N-acyl-aliphatic-L-amino acid amidohydrolase 531 938 IPR010159 GO:0004046(InterPro)|GO:0005737(InterPro)|GO:0006520(InterPro)
Cone20ag0450 944 Gene3D Zn peptidases 527 720 - -
Cone20ag0450 944 Gene3D - 721 829 - -
Cone20ag0450 944 PANTHER AMINOACYLASE-1 520 940 IPR052083 GO:0004046(PANTHER)
Cone20ag0450 944 FunFam aminoacylase-1 isoform X1 720 831 - -
Cone20ag0450 944 MobiDBLite consensus disorder prediction 411 426 - -
Cone20ag0450 944 MobiDBLite consensus disorder prediction 229 251 - -
Cone20ag0450 944 FunFam Aminoacylase 1 529 720 - -
Cone20ag0450 944 SMART CHZ_2 401 436 IPR019098 -
Cone20ag0450 944 MobiDBLite consensus disorder prediction 379 488 - -
Cone20ag0450 944 Pfam Peptidase family M20/M25/M40 601 933 IPR002933 GO:0016787(InterPro)
Cone20ag0450 944 CDD M20_AcylaseI_like 534 936 - -
Cone20ag0450 944 SUPERFAMILY Bacterial exopeptidase dimerisation domain 721 826 IPR036264 -
Cone20ag0450 944 MobiDBLite consensus disorder prediction 1 22 - -
Cone20ag0450 944 MobiDBLite consensus disorder prediction 283 337 - -
Cone20ag0450 944 Gene3D - 857 938 - -
Cone20ag0450 944 MobiDBLite consensus disorder prediction 218 337 - -
Cone20ag0450 944 SUPERFAMILY Zn-dependent exopeptidases 534 937 - -
Cone20ag0450 944 Pfam Histone chaperone domain CHZ 402 434 IPR019098 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0450 K14677 - - vvi:100257526 660.988
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1255 Cone-Chr3:31384319 Cone20ag0450 Cone-Chr20:2294276 1.27E-175 transposed
Cone17ag1276 Cone-Chr17:9183973 Cone20ag0450 Cone-Chr20:2294276 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g282 . . . . . . . . . Cmo15g00703 . . . . Sed03g0794 . . Bhi04g01926 Tan11g1290 Cmetu03g0298 . Hepe02g2282 . Lcy10g1217 Cla08g00580 Cam08g0995 Cec08g0584 Cco08g0694 Clacu08g0704 . Cre08g0515 . . . Cone20ag0450 . . . Cme03g00572 Blo17g00180 . . . . Bpe14g00380 . Bma02g00220 . . . . . . Car15g00634 . . . . . . . . . . . . . . . . Lsi08g00426 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030120 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2