Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0457 ATGGGCGGGGATAGGGTGCAAAACATAGCATCAGAGGCCCTATCCTCGGACACAATCCCCATAGCTTTCATCCGATCAGAAACGGAAAGACCCGGAATCACAACCGTCCAAGGGAAGATCCTCGAGGTACCCGTGATCGATTTCAGCAACTCGGATGAAGAACAGATACTGAAGGGTGTCGAGGACGCTAGCCGGAACTGGGGAATGTTCCAAATTGTGAACCATGAAATACCCAATGAGGCAATAAGCAAATTGCAAAAGGTTGGAAAGGAGTTTTTCAAGCTACCCCAAGAAGAGAAAGAGGTTTATGCTAAGACTCCAGATTCTAAGTCTGTAGAAGGATATGGAACAATGCTTCAAAAAGAGATGGATGGAAAGAAAGGTTGGGTTGATCATTTGTTCCACAGGATTTGGCCACCGTCTGCCATTGATTACAAGTTTTGGCCTCAAAATCCTCCTTCTTACAGAGAATCTAACGAGGAGTATGCTAAGTGCTTGCACGGGGTGGTGGAGAAGCTACTTAAAAGCATGTCACGAGGGTTAGGGCTTGAAGGACATGAAGTCAAGGAAGCGGCCGGGGGTGACAACTTAGTATACCTATTGAAGATCAACTATTACCCACCATGTCCGCGTCCTGACCTGGCTCTCGGCGTGGTAGCCCATACCGACATGTCGGCCATCACGATTCTCGTGCCGAACGAAGTGCAGGGCCTCCAGGCATTCAAAGATGGGTACTGGTACGATGTCAGTTACATCCCTAATGCTCTAGTCATTCACATTGGGGACCAAATGGAGATAATGAGCAATGGGTGA 813 47.97 MGGDRVQNIASEALSSDTIPIAFIRSETERPGITTVQGKILEVPVIDFSNSDEEQILKGVEDASRNWGMFQIVNHEIPNEAISKLQKVGKEFFKLPQEEKEVYAKTPDSKSVEGYGTMLQKEMDGKKGWVDHLFHRIWPPSAIDYKFWPQNPPSYRESNEEYAKCLHGVVEKLLKSMSRGLGLEGHEVKEAAGGDNLVYLLKINYYPPCPRPDLALGVVAHTDMSAITILVPNEVQGLQAFKDGYWYDVSYIPNALVIHIGDQMEIMSNG 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2367967 2369908 + Conep20aG0047200.1 Cone20ag0457 460361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0457 270 Gene3D - 3 270 IPR027443 -
Cone20ag0457 270 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 196 270 IPR005123 -
Cone20ag0457 270 Pfam 2OG-Fe(II) oxygenase superfamily 200 270 IPR044861 -
Cone20ag0457 270 SUPERFAMILY Clavaminate synthase-like 15 270 - -
Cone20ag0457 270 Pfam non-haem dioxygenase in morphine synthesis N-terminal 43 151 IPR026992 -
Cone20ag0457 270 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 35 270 IPR050295 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0457 K05278 - - csv:101219245 435.647
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1047 Cone-Chr17:7904025 Cone20ag0457 Cone-Chr20:2367967 4.92E-10 dispersed
Cone20ag0457 Cone-Chr20:2367967 Cone4ag1384 Cone-Chr4:11199073 1.53E-89 dispersed
Cone20ag0457 Cone-Chr20:2367967 Cone4ag1383 Cone-Chr4:11196098 8.79E-143 wgd
Cone20ag0457 Cone-Chr20:2367967 Cone7ag1548 Cone-Chr7:10666698 1.36E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g306 . Blo12g00679 . . Bpe02g00077 . . Bma01g02641 . Cmo15g00711 . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0457 . . . . . . . . . . . . . . . . . . Car15g00641 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003902 1 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 1 2 2 43