Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0460 ATGGACCAGGATGCTAAGGTTCCAGTATCATCTTCACTCGCGAAGAATCTGAACCGTCCGATCAACGCCGACACCTCGTCGAAGAATTCTTCCTCCTCTTCTACTTCCCCTTCACGGGACTTTCTCCGAAATGTTCAGGCCGCCTTGAAGCGCCATCGTCCTCAAGGTGCAATGCTGTCAGATTGTATAAGACCTCAGCGTATGTTGGTTCCCCAACGTGATACTGGGATTTCAGAAGATATTAAGAAGTCTCGAGATGAGGTTTCATTTAGTCAAGTTTGTGTAGAGAAAATTTTGATAGCACAAACCAAGAGTAAGGTGGCCATTGTTGATGAACCTCAAGAAGATGCATCTATAACACCACCATCCGTGTCAGGAACCATAACCAAAAGCTTCGATGAAAGTTGCAGCCTATTTCATTCACAAGTTGATGAACCAAAAGTAGAGGCTGGCTTTCAAGCTAGAGAGTCAATTTCTGCCTTGCATGTCGAATCTCAGCAGGTTCATGGTCAGAAAATGGTTCATTTCTCAATAGAAAATAAGAAGACTTCTCATGAATTTGCAGGAAATGGTTGGGTAGCTAGCAGTCAAGGAGAAGCCTCTGCTATAACCAATCACAATGAAGCTGGGATTTCCTTGTTGGCACATCGAACATCTGCTATGGAGGATCAACTGCATCAATTCAGAAACTTTTTAATTCAGCCTATAACCCACTCGTCAGTTGTGGGACCGGCATATGCTACAACAACATCAGTTCACTCAACTTCAGCACCTATGCATATTAATTCAACAACACATTACTCTCATTTGCTTGAAGATAGCAGTTTTCAAGCTGTAGGAGAATCTTTAGATAACTCTAATGTCAACCCTCATCAGCATGTAACTCGGGGAAATATTGTGCAGCCTTCTGGCGCATCTCAAAAGGACATTAGTGGAGTGGTTACTACTAAATCTGCTAACTTGGTGATTGGTACTCACATGGAAATGAAGGAGAATGATATTTCAAACCAGCAGAAAGGAGGTGTTCCAAAGCAAACTAGTGGTCCAGAAAACTCTTCTATTCTTCATGATATACAAAGTGAAGGAAAAGCGTCAGTGGTTGATGTGATCAAATTACCTTCTGAGTCTCAGTTGCTCAAAAATACAGCATCAGATGTGAAGTTGGAACCTTATAAAAAGGACAAACAAGAAAAGACTGCAAGTGGTAAAGGTTCATCAGCACCACGTAAGAGGAATTATGATCCTGATTTGTTCTTTAAAGTTAATGGAAAACTTTATCAAAGGCTTGGGAAGATAGGTAGTGGAGGAAGCAGTGAGGTTCACAAAGTCATTTCATCGAACTGTACAATTTATGCACTCAAGAAAATAAAACTTAGAGGACGTGACTATGCCACTGCTTATGGATTTTGTCAGGAAATTGTGTATTTAAATAAGTTGAAAGGGAAGAACAATATCATACAGCTTGTAGACTATGAGGTGACGGATAAATCCTTACTCCAGCAAGTCATGAATGGCTCCATGATTAATAAAGACGCCCGGGTCAAGGAGGATGGATATATATACATGGTCCTTGAATATGGGGAAATCGATTTGGCTCATATGTTGTCTCAGAAGTGGAAGGAAATGGAAGGCTCCAATCAGATGATAAATGAGAACTGGCTTCGCTTCTACTGGCAGCAAATTCTTCAAGCTGTGAACACTATACATGAAGAACGTATCGTCCATTCCGACCTGAAGCCTGCTAATTTTCTTCTCGTCAAAGGTTCCTTAAAGCTTATTGATTTCGGTATTGCAAAAGCCATAATGAGTGATACAACCAACATTCAAAGGGATTCGCAGGTTGGTACATTGAGTTATATGTCGCCTGAGGCATTTATGTGCAACGAAAGTGACGAAAATGGAAACACAATAAAGTGTGGTAGGCCCTCTGATATATGGTCACTGGGCTGCATTCTTTACCAAATGGTATATGGCAGGACACCCTTCTCAGATTACAAGACATTCTGGGCCAAATTCAAAGTCATTACAGACCCAAATCATCAGATCAAATACGAGCCGGTTTCCAACCCTTGGCTTCTGGACCTTATGAAGAAGTGTCTTTCATGGGACCGCCATAAAAGGTGGAGAATCCCTCAGCTTCTTCACCACCCTTTTCTCGTGCCGCCTGTTTCACCCCATCTTTCTTTGTCCCCAAACCAGAGCTCTAAATTGCTTCAACTTATTGCTCAAGCTTGTACTAATGACAAGGATGCTAAATTGCTCTTCTGCTCTCAGCTCAAAAATTTGCTCCGGGAAAATGCAGTTGGTCAGCCGCTAATAACTTCTTTGTTAATAACATCTCAAGACGACCAATGTGAGTTAATTCCAGAAATTTCGAGAGTTCATCTTCAGCTCCAGAAACATTTAGAGTACAAGGAAAAATAA 2424 41.38 MDQDAKVPVSSSLAKNLNRPINADTSSKNSSSSSTSPSRDFLRNVQAALKRHRPQGAMLSDCIRPQRMLVPQRDTGISEDIKKSRDEVSFSQVCVEKILIAQTKSKVAIVDEPQEDASITPPSVSGTITKSFDESCSLFHSQVDEPKVEAGFQARESISALHVESQQVHGQKMVHFSIENKKTSHEFAGNGWVASSQGEASAITNHNEAGISLLAHRTSAMEDQLHQFRNFLIQPITHSSVVGPAYATTTSVHSTSAPMHINSTTHYSHLLEDSSFQAVGESLDNSNVNPHQHVTRGNIVQPSGASQKDISGVVTTKSANLVIGTHMEMKENDISNQQKGGVPKQTSGPENSSILHDIQSEGKASVVDVIKLPSESQLLKNTASDVKLEPYKKDKQEKTASGKGSSAPRKRNYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSNCTIYALKKIKLRGRDYATAYGFCQEIVYLNKLKGKNNIIQLVDYEVTDKSLLQQVMNGSMINKDARVKEDGYIYMVLEYGEIDLAHMLSQKWKEMEGSNQMINENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFMCNESDENGNTIKCGRPSDIWSLGCILYQMVYGRTPFSDYKTFWAKFKVITDPNHQIKYEPVSNPWLLDLMKKCLSWDRHKRWRIPQLLHHPFLVPPVSPHLSLSPNQSSKLLQLIAQACTNDKDAKLLFCSQLKNLLRENAVGQPLITSLLITSQDDQCELIPEISRVHLQLQKHLEYKEK 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2387780 2391264 + Conep20aG0047500.1 Cone20ag0460 460364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0460 807 FunFam serine/threonine-protein kinase mph1 isoform X1 540 722 - -
Cone20ag0460 807 MobiDBLite consensus disorder prediction 330 354 - -
Cone20ag0460 807 Pfam Protein kinase domain 426 719 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0460 807 PANTHER MIXED LINEAGE PROTEIN KINASE 25 735 - GO:0000776(PANTHER)|GO:0004674(PANTHER)|GO:0004712(PANTHER)|GO:0005634(PANTHER)|GO:0007059(PANTHER)|GO:0007094(PANTHER)|GO:0018105(PANTHER)|GO:0033316(PANTHER)|GO:0034501(PANTHER)
Cone20ag0460 807 MobiDBLite consensus disorder prediction 329 354 - -
Cone20ag0460 807 MobiDBLite consensus disorder prediction 389 415 - -
Cone20ag0460 807 SUPERFAMILY Protein kinase-like (PK-like) 419 729 IPR011009 -
Cone20ag0460 807 Gene3D Transferase(Phosphotransferase) domain 1 540 722 - -
Cone20ag0460 807 CDD PKc_Mps1 424 719 IPR027084 -
Cone20ag0460 807 SMART serkin_6 426 719 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0460 807 ProSitePatterns Protein kinases ATP-binding region signature. 432 454 IPR017441 GO:0005524(InterPro)
Cone20ag0460 807 Gene3D Phosphorylase Kinase; domain 1 419 528 - -
Cone20ag0460 807 MobiDBLite consensus disorder prediction 1 40 - -
Cone20ag0460 807 ProSiteProfiles Protein kinase domain profile. 426 719 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0460 807 FunFam serine/threonine-protein kinase mph1 isoform X2 419 506 - -
Cone20ag0460 807 ProSitePatterns Serine/Threonine protein kinases active-site signature. 573 585 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0460 K08866 - - csv:101214794 890.952
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0460 Cone-Chr20:2387780 Cone7ag1559 Cone-Chr7:10715928 2.68E-20 dispersed
Cone20ag0460 Cone-Chr20:2387780 Cone20ag0467 Cone-Chr20:2449845 5.40E-17 proximal
Cone20ag0460 Cone-Chr20:2387780 Cone4ag1378 Cone-Chr4:11174201 1.16E-224 wgd
Cone20ag0460 Cone-Chr20:2387780 Cone7ag1553 Cone-Chr7:10688013 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g316 . . . Bda03g00522 . Bpe04g00476 . . Cmo04g02447 Cmo15g00716 . . . . . . . . . . . . . . . . . . . . . Cone4ag1378 Cone7ag1553 . Cone20ag0460 . . . . Blo17g00188 . . Bda13g01492 . Bpe14g00372 . Bma02g00233 . . . . . Car04g02260 Car15g00648 Cpe01g02029 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003876 2 3 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82541 None None None None Cone PK