Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0461 ATGGAGGATTCGTTGCAGAGCTCGCTAAACGACGGCGGTTTAACGGTTTCTACTCTGCCAGAGAAGGGCCGCTGCCTCTTCACCACGAGAAATTTCTTTCCAGGTGAAGTAATAATACGGCAAGAACCTTATGTTAGCATACCGAACAACTCCACCCTTGAGTCAAGATGCGATCGATGTTTTAGTTCGACAAACCTTAAGAAGTGCTCGGCTTGCCATATTGTCTGGTACTGCAGTAGTACATGCCAGAAGTCAGAGTGGAAGTTGCATCGTCTTGAATGTGAAGCTCTCTCGAGGCTTGATAAGGACAGGCGGAAATCTGTTACTCCTTCCATACGGCTCATGCTCAAACTTTACATTCAGAGAAAATTGCAAAGTGACAAGATTATCGCAACAACGGCTACAGATAACTATGGATTGATTGAGGCTTTGGTGGCACATATAAATGAAATTGATAAAGAGCAACTTGTGTTGTATGCTCAAATGGGTAATCTTGTCAACTTGATTCTTAATTGGCCTGACCTCGACATCAAAGAGATTGCAGAAAACTTTTCCAAGCTAGCTTGCAATGCCCATACAATTTGTGACGGTGAACTTATACCCTTAGGGACTGGACTCTATCCTGTAATTTCAATTATTAACCACAGCTGCTTGCCCAATTCCGTGTTAGTATTTGAGGAAAGATCGTCTGTTGTTCGTGCTGTGCAACATATACCAAAAGGTTCTGAGGTGTTGATTAGTTACATTGAGACTGCTGGAAGCACCATGACTCGGCAAAAGGTTCTTAAACAACAATATTTTTTTACTTGCACCTGTCCTCGATGCATTAAAGCGGATCAACCGGAAGATATACGTGAAAGTGCAATCCTTGAAGGATACAGGTGCAAGAACGACGAATGTGATGGTTTCTTGCTCCGTAATGCTGTTGCAGATGACAAAGGGTTTGTATGCCAGCAATGTGGACTTTTTAGGAACAAGGAAGAGATAAAAGTTATTGCAAGAGAAATAAAAACTATGACAGAGAAAGCTCTTTTGTTTACATCCTCCAGGCAAAATCAGGAGGCTATTTCTATGTACGAGCGGATTGAAAAACTCCAAAGGAGATTGTGTCATCCTTTCTCAATCAGCTTGATGCAAACTCGAGAAAAGCTTCTGAAGATGCTGATGGAGCTGGAAAATTGGAGAGAAGCTCTAGTATACTGCAGATTGACTATTCCGGTATATGAGAAGTTATATCCAGATTTTCATCCTTTGCTCGGACTTCAGTACTATACTTGCGGGAAGCTAGAATGGTATCATGGGGAGACACAGAATGCTGTTAAATCCTTGACCAAGGCCATTGATATACTCCGAGTCACTCACGGAACCCGTACGAGTTTTATGAAGAAGCTTTTAATGAAATTGGACGAAGCTCGGGCAGAAGCTTCTTATAAAGGCTCTTCTCATAATCAGACGCATCTTCTTCTCTAA 1470 42.04 MEDSLQSSLNDGGLTVSTLPEKGRCLFTTRNFFPGEVIIRQEPYVSIPNNSTLESRCDRCFSSTNLKKCSACHIVWYCSSTCQKSEWKLHRLECEALSRLDKDRRKSVTPSIRLMLKLYIQRKLQSDKIIATTATDNYGLIEALVAHINEIDKEQLVLYAQMGNLVNLILNWPDLDIKEIAENFSKLACNAHTICDGELIPLGTGLYPVISIINHSCLPNSVLVFEERSSVVRAVQHIPKGSEVLISYIETAGSTMTRQKVLKQQYFFTCTCPRCIKADQPEDIRESAILEGYRCKNDECDGFLLRNAVADDKGFVCQQCGLFRNKEEIKVIAREIKTMTEKALLFTSSRQNQEAISMYERIEKLQRRLCHPFSISLMQTREKLLKMLMELENWREALVYCRLTIPVYEKLYPDFHPLLGLQYYTCGKLEWYHGETQNAVKSLTKAIDILRVTHGTRTSFMKKLLMKLDEARAEASYKGSSHNQTHLLL 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2390693 2394768 - Conep20aG0047600.1 Cone20ag0461 460365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0461 489 Gene3D - 56 106 - -
Cone20ag0461 489 ProSiteProfiles SET domain profile. 12 249 IPR001214 GO:0005515(InterPro)
Cone20ag0461 489 Pfam MYND finger 57 94 IPR002893 -
Cone20ag0461 489 Gene3D SET domain 25 275 IPR046341 -
Cone20ag0461 489 Pfam SET domain 23 248 IPR001214 GO:0005515(InterPro)
Cone20ag0461 489 SUPERFAMILY SET domain 12 270 IPR046341 -
Cone20ag0461 489 Gene3D Tetratricopeptide repeat domain 404 486 IPR011990 GO:0005515(InterPro)
Cone20ag0461 489 ProSiteProfiles Zinc finger MYND-type profile. 57 94 IPR002893 -
Cone20ag0461 489 Coils Coil 377 397 - -
Cone20ag0461 489 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 8 434 IPR050869 GO:0005634(PANTHER)|GO:0018024(PANTHER)|GO:0034968(PANTHER)
Cone20ag0461 489 ProSitePatterns Zinc finger MYND-type signature. 57 94 IPR002893 -
Cone20ag0461 489 SUPERFAMILY TPR-like 339 449 IPR011990 GO:0005515(InterPro)
Cone20ag0461 489 Gene3D - 107 191 - -
Cone20ag0461 489 SMART set_7 12 255 IPR001214 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0461 K11426 - - cit:102613642 733.021
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g318 . . . . . . . . . Cmo15g00718 . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0461 . . . . Blo17g00189 . . Bda13g01493 . Bpe14g00371 . Bma02g00234 . . . . . . Car15g00650 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005114 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 8 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45596 None None None None Cone TR