Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0462 ATGTTGTTAACGACCTCTCTGCGAATTTTTTTCAGTATAAGGAGTTCTCTCTGCTTTCCCTCTCTACGAAGTTCTCTCTCTACGCCTCCACTTTCTCTCCGCCGAGTTCTATTACCTTACGTCGAGGCTTGTACACCTCCTTTCTCAGTCGCCGCCTCAGCGATGGCCTCCTCTTGTTCATCCTGTATGCTGGTTTTATATGGAAAATCAGCGGCGGATAATGAAATCGCTGAATCACTGAAGAGAGACAACACCTTGAAACTCAATGACAGTAGCGATCTTTCGATTCGATTGCTTTCGGAAATGGATAAACCCTGCAATGAAGAATCGTTTCAGCTTGAGTTGTTTATGACTTCTCTTTCTACTAATCGGTTTGGTAGATTCCTCATTTGGTCTCCACGATTGCCTTCTACTCACGACGTCGTTTCCCAAAATTTTTGTGCGCTTCCTCTTGGTTCCGTTTGTGTTACTGATGTTCAGTTCAAAGGGCGAGGTCGGTCGAAGAACTTGTGGGAGTCTCCAATGGGTTGCCTTATGTTTTCCTTCACTATGGAAATGGAAGATGGTCGCATTGTGCCTCTTGTACAGTATGTAGTTTCTCTCTCTATTACTGAGGCCATAAAGGATATCTGTGATTCTAAAGTTTTACCCTGTCTTGATGTTAAGATAAAGTGGCCAAATGATCTCTACTTGAATGGCTTAAAAATTGGAGGCATTCTATGCACCTCAACGTATAGGTCGAAGAAGTTTAATGTCAGCTGTGGTATAGGTTTAAATGTTGATAATGAGAAACCAACTACTTGTTTGAACCAAGTTCTTAGAGATTTGACTGCTGCATCTTATAAATTGAGAAGAGAAGATATTCTTGCATCCTTTTTCAACAAGTTTGAAACTTTTTATTCTCTCTTCATAAATCAAGGGTTTCAAACTCTTGAAGAGCTCTACTGTAAGACATGGATGCACAGCGGGCAGAGAGTTATCATAGAAGAAAAGAAGGAAGATCAAGTAGTAGAAAACGTAGTCACTATTCAGGGTTTGACAGCTTCGGGATATTTGCTTGCTATTGGAGATGACAATCAGATGTATGAGCTTCATCCTGATGGAAATAGTTTCGATTTCTTCAAAGGATTGATCAAAAGGAAACTTGAGTGA 1152 40.71 MLLTTSLRIFFSIRSSLCFPSLRSSLSTPPLSLRRVLLPYVEACTPPFSVAASAMASSCSSCMLVLYGKSAADNEIAESLKRDNTLKLNDSSDLSIRLLSEMDKPCNEESFQLELFMTSLSTNRFGRFLIWSPRLPSTHDVVSQNFCALPLGSVCVTDVQFKGRGRSKNLWESPMGCLMFSFTMEMEDGRIVPLVQYVVSLSITEAIKDICDSKVLPCLDVKIKWPNDLYLNGLKIGGILCTSTYRSKKFNVSCGIGLNVDNEKPTTCLNQVLRDLTAASYKLRREDILASFFNKFETFYSLFINQGFQTLEELYCKTWMHSGQRVIIEEKKEDQVVENVVTIQGLTASGYLLAIGDDNQMYELHPDGNSFDFFKGLIKRKLE 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2394803 2397768 + Conep20aG0047700.1 Cone20ag0462 460366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0462 383 Pfam Biotin/lipoate A/B protein ligase family 132 259 IPR004143 GO:0036211(InterPro)
Cone20ag0462 383 NCBIfam biotin--[acetyl-CoA-carboxylase] ligase 132 354 IPR004408 GO:0004077(InterPro)|GO:0036211(InterPro)
Cone20ag0462 383 PANTHER BIOTIN PROTEIN LIGASE 52 382 - GO:0004077(PANTHER)|GO:0005737(PANTHER)
Cone20ag0462 383 Gene3D Bira Bifunctional Protein; Domain 2 117 318 IPR045864 -
Cone20ag0462 383 SUPERFAMILY Class II aaRS and biotin synthetases 114 319 IPR045864 -
Cone20ag0462 383 CDD BPL 128 303 IPR004408 GO:0004077(InterPro)|GO:0036211(InterPro)
Cone20ag0462 383 ProSiteProfiles Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) catalytic domain profile. 114 304 IPR004143 GO:0036211(InterPro)
Cone20ag0462 383 Pfam Biotin protein ligase C terminal domain 321 376 IPR003142 GO:0036211(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0462 K01942 - - cit:102613353 525.013
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g319 . . . . . . . . Cmo04g02446 . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0462 . . . . . Blo18g00194 . Bda01g01411 Bpe02g01624 . Bma01g00836 . . . . . . Car04g02259 Car15g00651 Cpe01g02028 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005522 1 4 1 1 1 1 2 1 0 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 37