Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0466 ATGGCAACTTCAGTGGAGAACGGCCGCTACGGCCACATCGAACCGGGTCTAAACAGCACCGTCCACACATTCAACCGCCGGTCCGACTCGCCGCCGGTTCGTGGCTGTAACTTCCCTTACGGCAGTTCCTCTTTGAAATTACCAGTCCAAAAGGAAAAGGCAGAAGAGGAGGAGGAATACTCTGGTAGTGAGGACGAGAATGAAATTATCAGTTTTCACGACTCGATCAAAAAAGGCAACAACGAATTAGAGCCGTCGATCTTGGACCCTAGAGACGAAGGAACGGCAGATTACTGGATCGAGCGTAATCCTTCCTTGGTCCGTCTCACAGGGAAGCACCCCTTCAATTCGGAGCCTCCCTTAACTCGTCTCATGCACCACGGCTTCATCACTCCGGTCCCACTCCACTACGTTCGAAACCACGGCCCAGTCCCACAAGCCACGTGGGCCGACTGGACTGTCGAGATCTGCGGGCTCGTAAAAAACCCTGCCCGATTCACGATGGACCAACTCGTCAACGAGTTTCTGTCACGTGAGTTTCCCGTGACCTTAGTTTGCGCCGGAAACAGGCGCAAAGAACAAAACATGGTCAAACAGACAATCGGGTTCAACTGGGGAGCCGCAGCGATCTCCACTTCCGTGTGGCGCGGCGTACCGTTACGTCACGTGCTCAAGCGGTGTGGGATCTTACCACGTAGGAAGGGAGCTCTCAATGTGTGCTTTGAAGGAGCTGAGGATTTGCCAGGTGGCGGCGGGTCCAAGTACGGAACCAGCATAAGGAAGGAGTTCGCCATGGATCCCGCGAGAGACATCATTTTAGCTTACATGCAAAACGGCGAGCTTTTAGCTCCGGATCACGGTTTTCCTGTTCGGGTCATAATACCCGGATTCATCGGCGGGAGGATGGTCAAATGGGTCAAACGAATCATGGTCACCACGCAAGAATCTGATAGTTATTATCATTACAAAGATAATAGAGTTCTCCCTTCTCATGTTGATGCCGAGTTATCAAATTCCGAAGCATGGTGGTACAAGCCGGACTACATAATAAATGAATTGAACATAAACTCGGTAATAACAACGCCGTGTCATGACGAGATATTGCCGATCAACTCATGGACAACTCAAAGACCGTATACCATAAAGGGATACGCATATTCCGGAGGGGGAAAAAAGGTGACACGCGTGGAAGTGACGATGGACGGAGGAGAAAAATGGCATGTCTGCAGGGTGGAGCATCCAGAGAAGGCGACTAAGTATGGGAAGTATTGGTGCTGGTGTTTCTGGTCGGTCGAGGTGGAGGTTCTGGACCTGCTCGGAGCCAAGGACATCGCGGTTCGAGCTTGGGACGAGACCCTAAATACCCAGCCCGAGAAGCTCATCTGGAATCTCATGGGAATGATGAACAACAGCTGGTTCCGAATCAAAGCAAATGTCTGCAAACCCCACAAGGGTGAGATCGGCATTGTTTTCGAACACCCAATTTTACCAGGCAACCAATCCGGCGGCTGGATGGCCAAAGAGCGACACCTTGAGATCACCACTAGCGAGTCCAACCACCATACACTAAAGAAATCCCTCTCTTCCCCTTTCATGAACACCACCTCAAACACATACTCCATGTCGGAAGTAAAAAAACACAACTCCGCCCAGTCTGCGTGGATCGTCGTTCATGGCCACATCTACGACTGCACCCACTTCCTAAAAGACCATCCTGGTGGGGCCGACAGCATCCTGATCAACGCCGGAACTGACTGCACCGAAGAGTTCGACGCTATCCACTCCGACAAAGCCAAGAAGCTTCTAGAAGATTGCCGTGTCGGGGAAGTAGTAACGACCGGTTACATGTCAGACTGCTCTTCTCCAAACGAAACCGTTCATGGAGCCTTAGCCCCTATAATCGAGCTGACCACGCCGTTTAACTTAAAACGTGTAGCGCTTGTTAGCCCTAGAGAAAAAATCCCGTGTAAGCTCGTATCCAAAACGTCCTTGTCTCACGACGTTCGGCTTTTCCGATTCAAGTTGCCGTTTGAGGATCAGGTGTTAGGATTGCCTGTGGGCAAGCACATCTTTCTATGTGCAACCATTGACGGTAAGCTTTGCATGAGGGCTTATACGCCTACAAGCAGCGTTGATGAAGTGGGGTACTTTGATCTAGTGGTCAAGATTTATTTCAAAAACGTTCATCCAAAGTTCCCTAACGGGGGACTAATGTCCCAACATTTAGAGGAACTAGAATTAGGCTCAGTCATTGAAGTCAAGGGCCCATTGGGGCATATAGAGTATACCGGCGGCGGTCAATTTTTTGTCAACGGCAAACCCAAGTTTGCTAAAAGACTAGCGATGATTGCGGGTGGGACCGGTATAACGCCAATTTACCAGGTGGTGAAGGCAATATTGAAAGATCCGGAGGACAGAACTGAAATGTTTGTGATATATGCGAATAGGAGTGAGGATGATATTTTGTTGAGAGAGGAGTTCGATAGTTGGGCAAAGAAGGATGAGAGGTTGAAAGTGTGGTACGTTGTGCAAGAGAGTGTTAGGGAAGGGTGGGAATACAGTGTGGGATTCATCACTGAGAGTATACTGAAGGAGCACGTCCCAGATGGATCTGACGGTCAGAGTTTGGGTTTGGCTTGTGGGCCACCACCCATGATTCAGTTTGCAGTCATGCCCAATTTGGAGAAGATGAACTACGATGTTAAGGATTCCGTCTTGGTTTTTTAG 2727 49.8 MATSVENGRYGHIEPGLNSTVHTFNRRSDSPPVRGCNFPYGSSSLKLPVQKEKAEEEEEYSGSEDENEIISFHDSIKKGNNELEPSILDPRDEGTADYWIERNPSLVRLTGKHPFNSEPPLTRLMHHGFITPVPLHYVRNHGPVPQATWADWTVEICGLVKNPARFTMDQLVNEFLSREFPVTLVCAGNRRKEQNMVKQTIGFNWGAAAISTSVWRGVPLRHVLKRCGILPRRKGALNVCFEGAEDLPGGGGSKYGTSIRKEFAMDPARDIILAYMQNGELLAPDHGFPVRVIIPGFIGGRMVKWVKRIMVTTQESDSYYHYKDNRVLPSHVDAELSNSEAWWYKPDYIINELNINSVITTPCHDEILPINSWTTQRPYTIKGYAYSGGGKKVTRVEVTMDGGEKWHVCRVEHPEKATKYGKYWCWCFWSVEVEVLDLLGAKDIAVRAWDETLNTQPEKLIWNLMGMMNNSWFRIKANVCKPHKGEIGIVFEHPILPGNQSGGWMAKERHLEITTSESNHHTLKKSLSSPFMNTTSNTYSMSEVKKHNSAQSAWIVVHGHIYDCTHFLKDHPGGADSILINAGTDCTEEFDAIHSDKAKKLLEDCRVGEVVTTGYMSDCSSPNETVHGALAPIIELTTPFNLKRVALVSPREKIPCKLVSKTSLSHDVRLFRFKLPFEDQVLGLPVGKHIFLCATIDGKLCMRAYTPTSSVDEVGYFDLVVKIYFKNVHPKFPNGGLMSQHLEELELGSVIEVKGPLGHIEYTGGGQFFVNGKPKFAKRLAMIAGGTGITPIYQVVKAILKDPEDRTEMFVIYANRSEDDILLREEFDSWAKKDERLKVWYVVQESVREGWEYSVGFITESILKEHVPDGSDGQSLGLACGPPPMIQFAVMPNLEKMNYDVKDSVLVF 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2440144 2444199 - Conep20aG0048100.1 Cone20ag0466 460370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0466 908 CDD cyt_b5_reduct_like 656 908 - -
Cone20ag0466 908 CDD eukary_NR_Moco 92 476 - -
Cone20ag0466 908 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 89 350 IPR036374 -
Cone20ag0466 908 PRINTS Cytochrome B5 reductase signature 748 762 - -
Cone20ag0466 908 PRINTS Cytochrome B5 reductase signature 703 710 - -
Cone20ag0466 908 PRINTS Cytochrome B5 reductase signature 819 830 - -
Cone20ag0466 908 PRINTS Cytochrome B5 reductase signature 876 884 - -
Cone20ag0466 908 PRINTS Cytochrome B5 reductase signature 781 800 - -
Cone20ag0466 908 PRINTS Cytochrome B5 reductase signature 682 693 - -
Cone20ag0466 908 Gene3D - 534 617 IPR036400 -
Cone20ag0466 908 MobiDBLite consensus disorder prediction 47 69 - -
Cone20ag0466 908 Gene3D - 758 908 IPR039261 -
Cone20ag0466 908 SUPERFAMILY E set domains 352 479 IPR014756 -
Cone20ag0466 908 SMART Cyt_b5_2 539 611 IPR001199 -
Cone20ag0466 908 Pfam Oxidoreductase NAD-binding domain 782 889 IPR001433 GO:0016491(InterPro)
Cone20ag0466 908 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 567 574 IPR018506 GO:0020037(InterPro)
Cone20ag0466 908 FunFam Nitrate reductase [NADH] 758 908 - -
Cone20ag0466 908 Pfam Oxidoreductase FAD-binding domain 656 762 IPR008333 -
Cone20ag0466 908 Gene3D - 352 528 - -
Cone20ag0466 908 Gene3D - 91 342 IPR036374 -
Cone20ag0466 908 FunFam Nitrate reductase 352 530 - -
Cone20ag0466 908 Pfam Mo-co oxidoreductase dimerisation domain 348 478 IPR005066 GO:0016491(InterPro)|GO:0030151(InterPro)
Cone20ag0466 908 FunFam NADH-cytochrome b5 reductase 641 757 - -
Cone20ag0466 908 PRINTS Cytochrome B5 signature 571 585 IPR001199 -
Cone20ag0466 908 PRINTS Cytochrome B5 signature 586 593 IPR001199 -
Cone20ag0466 908 PRINTS Cytochrome B5 signature 561 571 IPR001199 -
Cone20ag0466 908 PRINTS Cytochrome B5 signature 598 610 IPR001199 -
Cone20ag0466 908 SUPERFAMILY Riboflavin synthase domain-like 643 764 IPR017938 -
Cone20ag0466 908 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 534 614 IPR036400 -
Cone20ag0466 908 PANTHER SULFITE REDUCTASE 63 482 - GO:0006790(PANTHER)|GO:0008482(PANTHER)|GO:0020037(PANTHER)|GO:0043546(PANTHER)
Cone20ag0466 908 FunFam Sulfite oxidase, mitochondrial 534 614 - -
Cone20ag0466 908 Gene3D Translation factors 643 757 - -
Cone20ag0466 908 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 750 901 IPR039261 -
Cone20ag0466 908 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 158 193 IPR022407 GO:0043546(InterPro)
Cone20ag0466 908 Pfam Cytochrome b5-like Heme/Steroid binding domain 541 610 IPR001199 -
Cone20ag0466 908 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 819 830 IPR001709 GO:0016491(InterPro)
Cone20ag0466 908 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 807 816 IPR001709 GO:0016491(InterPro)
Cone20ag0466 908 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 781 800 IPR001709 GO:0016491(InterPro)
Cone20ag0466 908 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 570 580 IPR001709 GO:0016491(InterPro)
Cone20ag0466 908 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 851 867 IPR001709 GO:0016491(InterPro)
Cone20ag0466 908 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 703 710 IPR001709 GO:0016491(InterPro)
Cone20ag0466 908 PIRSF Nitr_rd_NADH 23 907 IPR012137 GO:0006809(InterPro)|GO:0042128(InterPro)|GO:0050464(InterPro)
Cone20ag0466 908 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 536 611 IPR001199 -
Cone20ag0466 908 PRINTS Eukaryotic molybdopterin domain signature 182 193 IPR008335 GO:0016491(InterPro)
Cone20ag0466 908 PRINTS Eukaryotic molybdopterin domain signature 266 282 IPR008335 GO:0016491(InterPro)
Cone20ag0466 908 PRINTS Eukaryotic molybdopterin domain signature 381 395 IPR008335 GO:0016491(InterPro)
Cone20ag0466 908 PRINTS Eukaryotic molybdopterin domain signature 283 296 IPR008335 GO:0016491(InterPro)
Cone20ag0466 908 PRINTS Eukaryotic molybdopterin domain signature 299 312 IPR008335 GO:0016491(InterPro)
Cone20ag0466 908 PRINTS Eukaryotic molybdopterin domain signature 107 121 IPR008335 GO:0016491(InterPro)
Cone20ag0466 908 PRINTS Eukaryotic molybdopterin domain signature 447 459 IPR008335 GO:0016491(InterPro)
Cone20ag0466 908 PRINTS Eukaryotic molybdopterin domain signature 129 145 IPR008335 GO:0016491(InterPro)
Cone20ag0466 908 PRINTS Eukaryotic molybdopterin domain signature 350 362 IPR008335 GO:0016491(InterPro)
Cone20ag0466 908 PRINTS Eukaryotic molybdopterin domain signature 422 432 IPR008335 GO:0016491(InterPro)
Cone20ag0466 908 PRINTS Eukaryotic molybdopterin domain signature 208 223 IPR008335 GO:0016491(InterPro)
Cone20ag0466 908 PRINTS Eukaryotic molybdopterin domain signature 193 205 IPR008335 GO:0016491(InterPro)
Cone20ag0466 908 PRINTS Eukaryotic molybdopterin domain signature 460 473 IPR008335 GO:0016491(InterPro)
Cone20ag0466 908 PRINTS Eukaryotic molybdopterin domain signature 395 407 IPR008335 GO:0016491(InterPro)
Cone20ag0466 908 FunFam Nitrate reductase 93 342 - -
Cone20ag0466 908 Pfam Oxidoreductase molybdopterin binding domain 141 320 IPR000572 -
Cone20ag0466 908 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 651 763 IPR017927 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0466 K10534 - - csv:101219000 1492.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0466 Cone-Chr20:2440144 Cone2ag0048 Cone-Chr2:241691 1.98E-61 dispersed
Cone20ag0466 Cone-Chr20:2440144 Cone1ag0382 Cone-Chr1:3268924 8.21E-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g325 . . . . . . . . Cmo04g02441 Cmo15g00727 . Cma09g00664 . . . Cpe06g00519 . . . . . . . . . . . . . . . . . . Cone20ag0466 Lsi04g02366 Csa04g01830 . . Blo17g00195 Blo18g00197 . Bda13g01500 Bpe02g01621 Bpe14g00366 Bma01g00839 Bma02g00239 Sed04g0506 . Cmo09g00648 . . Car04g02252 Car09g00590 Cpe01g02024 . Bhi09g02640 Tan01g3984 Cmetu09g0993 . Hepe01g2257 Mch11g0805 . Cla11g01515 Cam11g1575 Cec11g1604 Cco11g1602 Clacu11g1730 Cmu11g1548 Cre11g1965 . . Chy07g00682 Cme07g00892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000829 1 3 2 3 2 2 4 3 3 3 3 3 4 2 3 6 3 1 4 3 5 4 3 3 3 4 3 3 3 1 90