Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0467 ATGGATTCGAGGACGAAAGGAAGGAAACCGAGGCTCGACCGCCGCAACGCTGCAAAAAACATTGATTATGACGCTGTGTCTTCGCCTTCGGCAACCGATGATTCGTCGGAGTTTCTTTACACTCGGTCGCTTGAGCTGCCTGATAGAAAGAGCTTCCGGATTGAGGGAAATTACGGCGATTTTGATAGGCTGTGTTTGAGATTGGGGCTGTCAGGGCCCGAAGACTTCGCCATTTCGGCGACGGCGTGGGAGGCCATGAAAGAACGTTCGTCTTCGGATCTTCTACCGAGGACCAGGCTTCTCCAGTTGGGTAGTCTGGAGGCTGAGAAAGTTGATGAGGAGAAGAACGTGGTTGCAGCTGGATCGTTGTGTGAGAGAGTTGTGGATACTGTAAGAATCAGGGATGACACCGAGTTGACTCACATTGAACCTCCCGAGTCAATCGGTTGCTGTGCTACTCCTGCTAATGCTGCAGCTGTGCATTCCGTTAGAGTTAGGGATGCGGCGAAGTTGAGTCAGATTGAACCTTCCGAGTCAAGTGCCAGCTGTATCGTTAGTACCGGAGGTGGAGGCGGCGGGGGAATTAATGGAGTTAGGCCGCCATTACTCAAGCCCCCACCATCCATGCGGCTTCTAGCTGTTGATAATACAAGCTCGACTTGGGACTTACTTAGGGCTTTTGCTCCAGGTGATGATGAACCAGAGTCTTCATCAATGTTACAAGGTCGGAATAGTTTTTCTTCAGAAGAACATGATGATGATCCAGAAGAGGAGGTTGGTGATAGACCGGTGGTAGAGGAAGAAGAAGAGGGCAATATTTTAAAAGTTGTGGAGAGTGCTGCGGTTTTGGAGTCGGGTCCATCATCTTCGTTTACAACTTCAAATGATGATGATTCTTCTAGCACGACCACGGACCCATCATCCAACAATTCACCAATTGCAGGGTTCAGTCTCGCTTTTACAGACTGGGATAAGGGTGAACTTCTTGGCCGTGGGTCGTTTGGATCGGTATATGAAGGAATTACGAAAGATGGATCATTTTTCGCTGTCAAAGAAGTTTCACTTCTTGATCAAGGCAGTCAGGGAAGGCAGAGCATTTCTCAACTTGAGCAGGAGATTTATTTTCTAAGCAAGTTCGAGCATGAGAACATAGTTCGGTACCATGGGACAGCTAAGGATGAATCTAAGCTCTATATTTTTCTCGAGCTTGTAACAAAAGGCTCCCTAATGAGTCTCTATCAGAAGTACACTCTTCGAGAATCACTAGTTTCTGCATACACAGTACAGATTCTGCGTGGTTTGAAGTATCTACATGACCAAGGAGTGGTTCACAGGGACATAAAATGTGCAAATATATTGGTGGATGTCAAGGGATCAGTAAAGCTTGCAGATTTCGGACTGGCAAAGGTGACAAAACTAAATGATGTTAGATCCTGCAAGGGGACTGCATTTTGGATGGCACCGGAGGTGGTTAATCGAAAGAGTCAAGGGTATGGACTCCCAGCTGATATCTGGAGCCTTGGGTGCACTGTCTTAGAGATGTTAACTCGTCAAATACCGTACTCCGATTTAGAAAATCCGATGCAGGCATTATTCCGGATCGGAAGAGGTATCCCACCTCTTGTCCCTGATTCTCTATCAGAAGATGCAAGAGACTTCATTTTGAAGTGCTTACAAGTTAATCCTAGCAACCGCCCCTCTGCTTCTTCTCTCTTGGACCATCGATTCATCAAAAGTTCACTTCCCACTTAA 1752 46.92 MDSRTKGRKPRLDRRNAAKNIDYDAVSSPSATDDSSEFLYTRSLELPDRKSFRIEGNYGDFDRLCLRLGLSGPEDFAISATAWEAMKERSSSDLLPRTRLLQLGSLEAEKVDEEKNVVAAGSLCERVVDTVRIRDDTELTHIEPPESIGCCATPANAAAVHSVRVRDAAKLSQIEPSESSASCIVSTGGGGGGGINGVRPPLLKPPPSMRLLAVDNTSSTWDLLRAFAPGDDEPESSSMLQGRNSFSSEEHDDDPEEEVGDRPVVEEEEEGNILKVVESAAVLESGPSSSFTTSNDDDSSSTTTDPSSNNSPIAGFSLAFTDWDKGELLGRGSFGSVYEGITKDGSFFAVKEVSLLDQGSQGRQSISQLEQEIYFLSKFEHENIVRYHGTAKDESKLYIFLELVTKGSLMSLYQKYTLRESLVSAYTVQILRGLKYLHDQGVVHRDIKCANILVDVKGSVKLADFGLAKVTKLNDVRSCKGTAFWMAPEVVNRKSQGYGLPADIWSLGCTVLEMLTRQIPYSDLENPMQALFRIGRGIPPLVPDSLSEDARDFILKCLQVNPSNRPSASSLLDHRFIKSSLPT 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2449845 2457164 - Conep20aG0048200.1 Cone20ag0467 460371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0467 583 MobiDBLite consensus disorder prediction 1 34 - -
Cone20ag0467 583 SUPERFAMILY Protein kinase-like (PK-like) 298 580 IPR011009 -
Cone20ag0467 583 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524(InterPro)
Cone20ag0467 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0467 583 SMART serkin_6 323 577 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0467 583 MobiDBLite consensus disorder prediction 251 265 - -
Cone20ag0467 583 FunFam Mitogen-activated protein kinase 1, putative, expressed 321 583 - -
Cone20ag0467 583 MobiDBLite consensus disorder prediction 1 20 - -
Cone20ag0467 583 Pfam Protein kinase domain 324 577 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0467 583 ProSiteProfiles Protein kinase domain profile. 323 577 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0467 583 MobiDBLite consensus disorder prediction 227 273 - -
Cone20ag0467 583 Gene3D Transferase(Phosphotransferase) domain 1 320 583 - -
Cone20ag0467 583 MobiDBLite consensus disorder prediction 285 311 - -
Cone20ag0467 583 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 204 579 IPR050538 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0467 Cone-Chr20:2449845 Cone8ag0976 Cone-Chr8:9169745 3.58E-141 dispersed
Cone20ag0460 Cone-Chr20:2387780 Cone20ag0467 Cone-Chr20:2449845 5.40E-17 proximal
Cone17ag1261 Cone-Chr17:9077026 Cone20ag0467 Cone-Chr20:2449845 1.35E-277 wgd
Cone20ag0467 Cone-Chr20:2449845 Cone4ag1372 Cone-Chr4:11134160 1.76E-177 wgd
Cone20ag0467 Cone-Chr20:2449845 Cone7ag1559 Cone-Chr7:10715928 3.76E-176 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82542 PF01578 Cytochrom_C_asm 2.70E-08 CL0328 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0467 K13414 - cit:102609376 647.506