Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0468 ATGAGTGGAGACCGATGTCACCGGCAAGAGAAGATGATGGGTAGGGGTGCCGACGGAGGTTGTGGCACCGAGGAGCGGGCTTGCCCCATTTCTAGGGTTCCGGTGAGGTTTCCGGCGGAAAAACCGGAAATTCAGGAGAAGACGACTTCTGTGTCCGTAGACTTCTTCACGCAGGCTCATAAGGCTCTGAGCGAGCACTCGGCATTTGATGTCTCAGATGAGGCGACAGCTTCTGCTTCGGCTAGTACTTCAACAGTGCTTACTTTGCCTTCTGGGCTGGCAAAATTCATTGCAAGGAGTTCTCACAGTCGAAAAAAGAATAAGAAGTCTCATTCAGGTGCTGACAAGAAGCCATCTAGGCAGAGCGAGAAGTCGCGTGGTTACAATATTTGGGCTGAGACTGAGCAGTATTTCAGAGACTTGACACAACTCGACATAGAAGCTCTGTCTGAGGTATCTTCTTTAAGTGCTTTATGTGGGAAGTTCTTCTTAATTCCCATTTTGGGTAGCGGTCGTAGCTCAAATGTGGGTTCCCGTGTGAATGTTATTATTAGTGGCGGGAATGAGAATGACGTTATTGTTGAAGAGGAGGTTGAGAAGGAGGATGAGCTGCCCCTTGAAATTGATATGGGGGAAGCAGAGACTTCGCCTCAGGAGGATGATATGACTTGTTCTGTTTCAGATATATCTCATGGTTTAGAGTGGCTTTTAGGTTGTCAGAATAAGGTATCCTTAACTTCGGAGCGTCCTTCAAAGAAGCGGAAGCTCTTGGGTAGCGATGCAGGATTGGACAAAGTTCTTGTTACCCTTCCTTGCGAAGGGAATTCATCGTTATGTCACTTTTGCTCTAAGGGCTGGGATATGGTTGGAGAGTCGAACTCATTAGTTGTTTGCAGTAATTGTAAGGTTGTAGTGCACCAGAAGTGCTATGGTGTTGTACAGGAGATTGCTGGGTCTTGGCTGTGTAATTGGTGTAGGCAAATAGGTGATGACAGCAAGGATTCTTTGAAGCCTTGTGTGCTCTGTCCGAAGCAGGGTGGTGCATTAAAGCCTGTTCATAAGAATGTAAAAAATGAAGGGTCCATGGAATTTGCTCATTTATTTTGTAGTCAGTGGATGCCAGAAGTATACATAGAGGACTTGAAGCAGATGGAGCCCATTATGAATGTGGAAGGAATAAAGGAAACACGGAGAAAATTGGTTTGTAACGTATGCAAGGTGAAGTGTGGTGCTTGTGTTCGTTGCAGTCATGGAACGTGCAGGACTGCCTTCCATCCTATATGTGCAAGGGAGGCTAGACACAGAATGGAAGTTTGGGGAAGATATGGGAGTGATAATGTTGAGCTTCGTGCTTTCTGTTCGAAGCACTCAGAAGTAGTGGATAGTAGTAGTGATCCAAAATTACGAGATCCTTCTGAACCTATTGTGGGAGAATCCTGCGTTGTCAATCCGCTTCCAATCACATTATCGATTAACAGGCCACATAAGTTGGTGATTGGCCCGAGAAATGTGGATAATATTGCACTTCGTGTGGAAACTCCTGATCTCGATTCTAATGAATTGGCTGATGATGTTTTAAAAGAGGTGGGATTGGCCCATTCTAGGTTAGATGCAGGCCAGGTAGCAAAATTTGATGATTCAACGAATTCAACTGTCATGGGAACATTCCAGAAGGGAGATGAGGATGTAAACCCATCTGACTCCCTAAAATTTGCAGCAATATTGAAAAAGTTGATTGATCGTGGAAAAGTAGATGTCAAAGATGTAGCATCACAGATTGGATTATCACCTGATACTTTAATTTCAAAACTTGTGGGTGACAACCTGATGCCTGACTTGGGACACAAAATTGTTAAATGGCTTAAAGCTCATGCTCATATAGGCAATCAACAGAAAAACTTGAGAGTTAAAATAAAATCGGCTGCTTTATCCAAAGATGATGGTGGAGCTGCAGATGGGTTTGACAAAGTAGATCCCGGCGATGTAAGGTCAGTACCTCCACGAAGAAGAACCAAAAATGATATTAGGGATTTGAAGTATAACGAAGTAACATGCTCATCTGAGGAAGCTTTAGGCAACAAAGATATGGTATTGGAAAATCAAAGAGAAGATAAACTTGATGATGAAGAACCAGAAAGTTCAAGTAAAGAATCTGTCCCAGGGAACAATGAAAAGCACTCATCTGAGCATAATGGGCTTCAAGATTCTTTACAAGGGCTTTTGTCCAATTGTGAAGATCATGAGGATTGTGCTTATTCAGTTGCCAATCCGGCTGTACCTGATCTGACAAAAGCAGGAGCATCTCCAAGTTCTTACATTCATCCGTATATCCAGAACCAATTTTTGCAAATGCATAGTGGCTCGACTGAGGGAGTAATGTCTCGTGTGGTTGAATCTTCCAAAGCAAGTGTTTGCTGTATTCATGAGAATCAACACTCAGAATGTAGTGAAACAGAGTGGAAATCTGATGGTACAAATCTAGATCAATTGGCCAAGGCTAGGGGAATGGGAGTTCTGGAACTTCATCCTGAAGATGAAGTAGAAGGAGAACTTATATACTATCAGCAGAGGTTACTGGCCAATGCAGTTGCAAGACAGCAGTTTACTGATAATCTAATTCATAATGTCTCTAAGAGCCTGCCAAAAGAGGTTGATGATACTAGGAGTCAAAGATGGGATGCCGTGCTCGTAAACCAATATCTTTCTGAGCTTAGAGAGGCAAAAAAGCAGGGTAAGAAAGAGAGGAGACATAAGGAAGCACAGGCAGTACTTGCTGCTGCAACTGCTGCAGCAGCAGCCTCTTCTAGGATATCATCGTTAAGAAAAGACATATTTGATGAGTCTGTTAATCCAGAGAGTTTGTCGAAGTTGAATACTTTTAATGGAAGGGCTGGCATTTGCTCCCAGCTGATGCCTCGGCTAAAAGAAACTCTTCCAAAGGTTTCTCCCCCGAAGATTTCAGTGGAGAAGCATTCTGAATCAGTTCCATCAGTTTCAGATTTTTCTAAAGAACATCCCAGATCATGTGATATCTGCAGACGTTCTGAGACATCATTAAACCCAATCCTAGTCTGTTCCAGTTGCAAGGTTACAGTTCACTTGGAATGCTATCGTACTGTTAAAGAGTCTTCAGGTCCATGGCATTGTGAGCTATGTGAAGAATTATCAACATCAAAAAGTGCCAGAGATCCAACTGTCAATTTTTGGGAGAAGCCGTATTTCGTGGCGGAGTGTGGCTTATGTGGTGGGAGCACTGGTGCTTTCAGGAAATCATCAGATGGCCAATGGGTCCATGCGTTCTGTGCGGAGTGGGTATTTGAATCAACATTCAGAAGGGGACAATCGAACCCTGTGGAAGGAATGGAGACTGTTTCAAAGGGGGTTGATGTTTGTCATATTTGTCGTCGCAACCATGGTGTCTGTATAAAGTGTAACTATGGCCATTGCCAATCCACTTTCCATGTTTCCTGTGCAAGAAGTGCTGGTTTCTATATGAATACGAGGACTTCTGGTGGCAGATTGCAACACAAGGCATACTGTGAAAAGCATAGCTCAGAGCAGAGGGCAAAGGCTGAAAATCAAACACATGGAATTGAGGAGCTGAAAAGAATCAAGAAAATACGGGTTGAATTGGAGAGGTTACGCCTTCTTTGTGAACGAATTATCAGACGTGAGAAATTAAAGCGCGAATTGGTTCTCTCTTCCCAGGACATACTTGCTTTCAAAAGGGACCATGTTGCTCGATTAGCTCTCTCACGCAGTCCATTCTTACTTCCCGAGATTAGTTCAGAGTCGGCCACCACATCGCTTAAGGGTGCCACAGACGATATCAAATCCTGCAGTGAAGCTTTCCAAAGATCGGACGACACAACTGTTGACAGCTCCATTTCTGCCAAGCATCAGACTAAATCCCGAACGTCTATGGAAACCAACGAGAAAATTGGCGATGACAACTCCACTTCCCGAAACCCCCATCCTAAAAAACTTGCAGAGAGGGTTCAATTTTCTGGGAAGCACATCCCTCATAGACCTGTAGTGCCATCACGGAATCTTGTTGATGGAGGATGGAAGATTAAATCTAGAAAACATGCTGAGACATTTCAAAAAGAGCTTGTAATGACATCGGATCAAGCTTCAATGAAGAACTCACTTTTACCGAAACAGTATATGTATGTTCCTGCTGATGTCCTTGTCAAGGAGAAGCAGCAGCAGCAGCAGCAAATCAAGAACCCGGATGCAGGTCCTGGTGAACCAATGGATAATGCTTGGTAG 4272 43.75 MSGDRCHRQEKMMGRGADGGCGTEERACPISRVPVRFPAEKPEIQEKTTSVSVDFFTQAHKALSEHSAFDVSDEATASASASTSTVLTLPSGLAKFIARSSHSRKKNKKSHSGADKKPSRQSEKSRGYNIWAETEQYFRDLTQLDIEALSEVSSLSALCGKFFLIPILGSGRSSNVGSRVNVIISGGNENDVIVEEEVEKEDELPLEIDMGEAETSPQEDDMTCSVSDISHGLEWLLGCQNKVSLTSERPSKKRKLLGSDAGLDKVLVTLPCEGNSSLCHFCSKGWDMVGESNSLVVCSNCKVVVHQKCYGVVQEIAGSWLCNWCRQIGDDSKDSLKPCVLCPKQGGALKPVHKNVKNEGSMEFAHLFCSQWMPEVYIEDLKQMEPIMNVEGIKETRRKLVCNVCKVKCGACVRCSHGTCRTAFHPICAREARHRMEVWGRYGSDNVELRAFCSKHSEVVDSSSDPKLRDPSEPIVGESCVVNPLPITLSINRPHKLVIGPRNVDNIALRVETPDLDSNELADDVLKEVGLAHSRLDAGQVAKFDDSTNSTVMGTFQKGDEDVNPSDSLKFAAILKKLIDRGKVDVKDVASQIGLSPDTLISKLVGDNLMPDLGHKIVKWLKAHAHIGNQQKNLRVKIKSAALSKDDGGAADGFDKVDPGDVRSVPPRRRTKNDIRDLKYNEVTCSSEEALGNKDMVLENQREDKLDDEEPESSSKESVPGNNEKHSSEHNGLQDSLQGLLSNCEDHEDCAYSVANPAVPDLTKAGASPSSYIHPYIQNQFLQMHSGSTEGVMSRVVESSKASVCCIHENQHSECSETEWKSDGTNLDQLAKARGMGVLELHPEDEVEGELIYYQQRLLANAVARQQFTDNLIHNVSKSLPKEVDDTRSQRWDAVLVNQYLSELREAKKQGKKERRHKEAQAVLAAATAAAAASSRISSLRKDIFDESVNPESLSKLNTFNGRAGICSQLMPRLKETLPKVSPPKISVEKHSESVPSVSDFSKEHPRSCDICRRSETSLNPILVCSSCKVTVHLECYRTVKESSGPWHCELCEELSTSKSARDPTVNFWEKPYFVAECGLCGGSTGAFRKSSDGQWVHAFCAEWVFESTFRRGQSNPVEGMETVSKGVDVCHICRRNHGVCIKCNYGHCQSTFHVSCARSAGFYMNTRTSGGRLQHKAYCEKHSSEQRAKAENQTHGIEELKRIKKIRVELERLRLLCERIIRREKLKRELVLSSQDILAFKRDHVARLALSRSPFLLPEISSESATTSLKGATDDIKSCSEAFQRSDDTTVDSSISAKHQTKSRTSMETNEKIGDDNSTSRNPHPKKLAERVQFSGKHIPHRPVVPSRNLVDGGWKIKSRKHAETFQKELVMTSDQASMKNSLLPKQYMYVPADVLVKEKQQQQQQIKNPDAGPGEPMDNAW 1423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2459873 2468215 + Conep20aG0048300.1 Cone20ag0468 460372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0468 1423 MobiDBLite consensus disorder prediction 647 676 - -
Cone20ag0468 1423 Pfam PHD-zinc-finger like domain 338 456 - -
Cone20ag0468 1423 Pfam PHD-zinc-finger like domain 1077 1183 - -
Cone20ag0468 1423 SUPERFAMILY FYVE/PHD zinc finger 1001 1054 IPR011011 -
Cone20ag0468 1423 ProSitePatterns Zinc finger PHD-type signature. 1009 1052 IPR019786 -
Cone20ag0468 1423 Pfam PHD-finger 293 325 IPR019787 -
Cone20ag0468 1423 Pfam PHD-finger 1020 1053 IPR019787 -
Cone20ag0468 1423 PANTHER PHD FINGER PROTEINS 194 982 IPR050701 GO:0006357(PANTHER)
Cone20ag0468 1423 MobiDBLite consensus disorder prediction 1288 1327 - -
Cone20ag0468 1423 ProSiteProfiles Extended PHD (ePHD) domain profile. 336 457 IPR034732 -
Cone20ag0468 1423 Coils Coil 901 921 - -
Cone20ag0468 1423 MobiDBLite consensus disorder prediction 1288 1304 - -
Cone20ag0468 1423 MobiDBLite consensus disorder prediction 649 676 - -
Cone20ag0468 1423 ProSitePatterns Zinc finger PHD-type signature. 279 325 IPR019786 -
Cone20ag0468 1423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 985 1064 IPR013083 -
Cone20ag0468 1423 SUPERFAMILY FYVE/PHD zinc finger 269 327 IPR011011 -
Cone20ag0468 1423 ProSiteProfiles Extended PHD (ePHD) domain profile. 1075 1184 IPR034732 -
Cone20ag0468 1423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 329 IPR013083 -
Cone20ag0468 1423 Coils Coil 1204 1224 - -
Cone20ag0468 1423 MobiDBLite consensus disorder prediction 1 31 - -
Cone20ag0468 1423 MobiDBLite consensus disorder prediction 703 734 - -
Cone20ag0468 1423 CDD ePHD 1078 1183 - -
Cone20ag0468 1423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 333 459 IPR013083 -
Cone20ag0468 1423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1075 1186 IPR013083 -
Cone20ag0468 1423 MobiDBLite consensus disorder prediction 1400 1423 - -
Cone20ag0468 1423 MobiDBLite consensus disorder prediction 1305 1327 - -
Cone20ag0468 1423 ProSiteProfiles Zinc finger PHD-type profile. 1006 1055 IPR019787 -
Cone20ag0468 1423 SMART PHD_3 401 457 IPR001965 -
Cone20ag0468 1423 SMART PHD_3 1008 1053 IPR001965 -
Cone20ag0468 1423 SMART PHD_3 1130 1184 IPR001965 -
Cone20ag0468 1423 SMART PHD_3 278 326 IPR001965 -
Cone20ag0468 1423 ProSiteProfiles Zinc finger PHD-type profile. 276 328 IPR019787 -
Cone20ag0468 1423 MobiDBLite consensus disorder prediction 100 126 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0468 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1260 Cone-Chr17:9066778 Cone20ag0468 Cone-Chr20:2459873 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g332 . . . . . . . . Cmo04g02429 . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1260 Cone20ag0468 . . . . Blo17g00200 . . Bda13g01503 . Bpe14g00362 . Bma02g00243 . . . . . Car04g02243 Car15g00662 Cpe01g02018 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003906 1 3 1 1 1 2 2 2 1 1 1 1 2 1 1 2 2 2 2 2 1 1 1 2 2 2 1 1 1 1 44