Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0474 ATGAAGAGTCGCAGTACTCAATCATCCGATGAAGAACCCGAAAGAGAAGTGATGGATTCTCAAAACATATCATCCTCTAACAACAATCATGAAGCACATTATCCAACTTACTTTCACAAAGTAGGGATTCCACAAAAGCAAAACCTCTTCAAGGAGCTCAAGTCCACCGTTAAAGAAATGTTGTTCTCGGACGATCCTCTCCGTCCATTTAAGGATCAACCAAGATCCCGAAAGTTCATTCTCGGAATCCAGACCATCTTTCCTATCTTCGAATGGGGCAGAAATTACAATTTTACAAAATTTAGAGGCGATCTCATTGCCGGGCTCACTATTGCAAGTCTCTGCATTCCTCAGGACATTGCATATGCAGAGCTTGCAAATTTGGATCCTAAATATGGACTATATTCGAGTTTTGTTCCACCTTTGATCTATGCTTTCATGGGTAGCTCAAGAGATATAGTTATTGGACCAGTTTCAGTGGTTTCTCTCTTTCTCGGAACCTTACTTTCAAAAGAGATTGACTACAATAAAGATGCTGAAGCATATCGACGGCTCGCTTTTACGGCCACCTTCTTTGCCGGGATCACTCAAGCTACACTTGGGTTTCTAAGGTTGGGTTTCTTGATCGATTTCTTATCCCATGCTGCCATTATCGGTTTTATGTCTGGAGCTGCCATAACTATTGCCCTTCAACAGCTTAAAGGCTTTCTGGGAATAACAACGTTTACAAAGAAAACCGACATTGTTTCTGTAATGCGTTCGGTTTTCTCGTCGGCTCATCATGGATGGAATTGGCAGACAATAGTCATTGCGGCAAGCTTTTTAGGCTTCCTTCTATTTGCTAAGTACATTGGAAAGAAGAACAATAAGCTCTTCTGGGTCCCTGCAATTGCTCCTTTGATATCGGTTATTCTATCTACCCTTTTCGTTTACCTTACTCATGCTGAAAAGAAAGGGGTCGCAATCGTCAAACCTATAGACAAAGGAATCAATCCCTCATCCGTCAAGGAAATATACTTCACCGGTGAATTTTTCCTCAAAGGTTTCCGGATCGGAGTTGTTGCCGGTATAATAGCACTAAATGAAGCTATAGCAATTGGAAGAACATTTGCATCCATGAAGGACTACCAACTGGACGGGAATAAAGAAATGGTTGCCCTAGGAACGATGAATATTATCGGTTCAATGACTTCTTGCTATGTAGCGACCGGTTCGTTTTCCCGATCGGCCGTGAATTACATGGTCGGTTGCCAAACAGCTGTTTCGAACATTGTCATGTCTTGTGTTGTGTTTTTGACTCTAGTGTTTTTGACTCATCTTTTCAAGCACACTCCAAAAGCTATTCTCTCCGCCATCATTATCTCCGCTGTGCTCAACTTGATTGACTTTCAAGCAGCTCTTTCGCTATGGAAGATCGATAAGATTGACTTTCTGACTTGCATGGGAGCCTTCTTTGGTGTCGTCTTTGTTTCCGTTAAGATCGGTCTCTTATCGCGGTTGCGATATCCTTTCTTAAGATACTCTTAA 1527 41.91 MKSRSTQSSDEEPEREVMDSQNISSSNNNHEAHYPTYFHKVGIPQKQNLFKELKSTVKEMLFSDDPLRPFKDQPRSRKFILGIQTIFPIFEWGRNYNFTKFRGDLIAGLTIASLCIPQDIAYAELANLDPKYGLYSSFVPPLIYAFMGSSRDIVIGPVSVVSLFLGTLLSKEIDYNKDAEAYRRLAFTATFFAGITQATLGFLRLGFLIDFLSHAAIIGFMSGAAITIALQQLKGFLGITTFTKKTDIVSVMRSVFSSAHHGWNWQTIVIAASFLGFLLFAKYIGKKNNKLFWVPAIAPLISVILSTLFVYLTHAEKKGVAIVKPIDKGINPSSVKEIYFTGEFFLKGFRIGVVAGIIALNEAIAIGRTFASMKDYQLDGNKEMVALGTMNIIGSMTSCYVATGSFSRSAVNYMVGCQTAVSNIVMSCVVFLTLVFLTHLFKHTPKAILSAIIISAVLNLIDFQAALSLWKIDKIDFLTCMGAFFGVVFVSVKIGLLSRLRYPFLRYS 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2524751 2528199 - Conep20aG0048900.1 Cone20ag0474 460378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0474 508 MobiDBLite consensus disorder prediction 1 29 - -
Cone20ag0474 508 MobiDBLite consensus disorder prediction 1 18 - -
Cone20ag0474 508 PANTHER SULFATE TRANSPORTER 62 499 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone20ag0474 508 NCBIfam sulfate permease 88 497 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cone20ag0474 508 Pfam Sulfate permease family 101 482 IPR011547 GO:0016020(InterPro)
Cone20ag0474 508 ProSitePatterns SLC26A transporters signature. 130 151 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1253 Cone-Chr17:9017762 Cone20ag0474 Cone-Chr20:2524751 3.30e-316 dispersed
Cone20ag0474 Cone-Chr20:2524751 Cone4ag1354 Cone-Chr4:11038032 2.41E-268 dispersed
Cone20ag0474 Cone-Chr20:2524751 Cone20ag0475 Cone-Chr20:2541111 1.49E-177 tandem
Cone17ag1252 Cone-Chr17:9006046 Cone20ag0474 Cone-Chr20:2524751 1.85E-135 wgd
Cone20ag0474 Cone-Chr20:2524751 Cone6ag1580 Cone-Chr6:12317946 3.25E-170 wgd
Cone20ag0474 Cone-Chr20:2524751 Cone9ag1499 Cone-Chr9:11017937 1.08E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0474 K17470 - mdm:103401023 755.362