Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0475 ATGGGTTCATTGCCAATTGAGATTTCAAGTGTAGTAGATCAGGAACTCCATCATCTTCATCATGTTCATGAAGATGCAACTGTTAATCCAACTGCCAAACTGCAGTTTGTGCTTGATTCTCCAGACCCGCCTAGCTTTTGGCAAGAACTGTCTGTTACAGTAAAAGAGAGCCTCGTCAATAATAATCCTCTAAGAAGAAAAAAATCCTCATCCATGAGAAGTAGTGGCATTTCGCTATTGCAGACGGTTTTTCCGATCCTCAGTTGGGGAAGAAACTACACAGCTTCAGACTTTCAGAAGGATTTAATGGCCGGCTTAACTCTTGCTAGTCTTAGCATTCCTCAGAGTATTGGGTATGCTAGCTTGGCCAAACTTGATCCACAGTATGGATTGTATACAAGTGCTGTTCCTCCTATGATATATGCTGTGTTGGGGAGTTCAAGAGAGTTAGCAATAGGACCAGTTGCTGTAGTCTCTTTGCTTCTTTCCTCAATGCTTGAGAAGACTGAAGATCCAATTGCTAACCCAATTGCTTATAGGAAGCTTGTTTTCACTGTCACTTTCTTTGCTGGAGCTTTCCAAACAGCATTTGGCCTTCTTAGATTGGGATTTCTGATCGATTTTCTTTCTCATGCCGCCATTGTTGGATTCATAGCCGGGGCGGCTATTGTTATCGGTCTTCAACAGCTGAAGGGTTTATTGGGGATTAATAATTTCACTAGCAAAACAGACGCTGTTTCGGTTTTAGAGTCGGTTTTTAAATCGTTTCACGATCAATTGTACCCTCTTAATTTTGTCCTCGGCTGTTCCTTCTTCATCTTCCTCCTATGTTCTAGATTTGTTGGCAGAAGAAACAAGAAGCTATTTTGGCTACCAGCCATTGCTCCACTTATATCTGTCATCTTATCCACACTCATAGTTTACCTAACAGGAGCTGATAAGCATGGAGTTAAGATTGTAAAACATATCGAAGGAGGGATAAATCCAAGCTCGGTTAATCAGATACAACTAAACGGCCCTCATCTCGGACAAGCTGCAAAAGTCGGCTTGATAGCCGGTATTGTCGCTCTCACCGAAGCTATTGCAGTTGGCCGGTCTTTCGCTTCGATCAAAGGCTACCATCTTGATGGGAACAAGGAAATGGTAGCCATGGGGTTTATGAACATCGTCGGGTCTTTAACTTCCTCCTATGTCGCAACCGGGTCATTTTCGAGGACTGCTGTGAATGTTAGTACTGGATGTCAAACAGTAGTTTCGAATATAGTGATGGCGGTTACGGTGATATTGTCACTAGAACTATTGACTAGATTCTTGTATTTCACTCCCATGGCTATCCTTGCTTCAATCATTTTATCGGCTCTTCCCGGACTTATAGACGTTAACGAAGCGTACTATATATGGAAAGTTGACAAGCTAGACTTTCTTGCTTGTATTGGAGCTTTTCTTGGAGTCTTGTTTGCTTCTGTGGAAATTGGTCTTCTTGCTGCTATTACCATCTCATTTGGCAAGATACTACTAAATTCGATCCGACCCGGGATAGAGATACTAGGAAGACTTCCTACAACAGATATATTCTGCAACATTAGCCAATATCCTATGGCCATTAAACCTCAAGGCATCATGATTATCCGGATCAACTCTGGATTGCTTTGTTTCGCCAATGCTAATTTTATTAGAGCAAGGATTATGAAGTGGGTAGAAGAAGAAGAAGACAAGATTGAAGAGAATGGTAGAGAAGGGAAAGTTGAAGAAGTAATACTTGACATGTCAAGCATAATTGCGTTAGAGGAGCTCCAAAAGAAATTGATGTCTCATGGAATACAGTTGGCTATGGCGAACCCAAAGTGGCAGGTGATTCACAAGTTGAAGATGGGGCAATTCGTTGAGAGAATCGGAGGGAAGGTGTTTTTGACCGTTGGTGAGGCCGTTGATGCAAGTCTTGGATCTAAGTTGCCTGGTCTTAGCCGTTAA 1971 42.16 MGSLPIEISSVVDQELHHLHHVHEDATVNPTAKLQFVLDSPDPPSFWQELSVTVKESLVNNNPLRRKKSSSMRSSGISLLQTVFPILSWGRNYTASDFQKDLMAGLTLASLSIPQSIGYASLAKLDPQYGLYTSAVPPMIYAVLGSSRELAIGPVAVVSLLLSSMLEKTEDPIANPIAYRKLVFTVTFFAGAFQTAFGLLRLGFLIDFLSHAAIVGFIAGAAIVIGLQQLKGLLGINNFTSKTDAVSVLESVFKSFHDQLYPLNFVLGCSFFIFLLCSRFVGRRNKKLFWLPAIAPLISVILSTLIVYLTGADKHGVKIVKHIEGGINPSSVNQIQLNGPHLGQAAKVGLIAGIVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSSYVATGSFSRTAVNVSTGCQTVVSNIVMAVTVILSLELLTRFLYFTPMAILASIILSALPGLIDVNEAYYIWKVDKLDFLACIGAFLGVLFASVEIGLLAAITISFGKILLNSIRPGIEILGRLPTTDIFCNISQYPMAIKPQGIMIIRINSGLLCFANANFIRARIMKWVEEEEDKIEENGREGKVEEVILDMSSIIALEELQKKLMSHGIQLAMANPKWQVIHKLKMGQFVERIGGKVFLTVGEAVDASLGSKLPGLSR 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2541111 2545548 + Conep20aG0049000.1 Cone20ag0475 460379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0475 656 NCBIfam sulfate permease 85 636 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cone20ag0475 656 Pfam STAS domain 531 642 IPR002645 -
Cone20ag0475 656 PANTHER SULFATE TRANSPORTER 70 647 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone20ag0475 656 ProSiteProfiles STAS domain profile. 547 596 IPR002645 -
Cone20ag0475 656 SUPERFAMILY SpoIIaa-like 537 644 IPR036513 -
Cone20ag0475 656 Pfam Sulfate permease family 98 478 IPR011547 GO:0016020(InterPro)
Cone20ag0475 656 CDD STAS_SulP_like_sulfate_transporter 531 637 - -
Cone20ag0475 656 Gene3D STAS domain 510 647 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1252 Cone-Chr17:9006046 Cone20ag0475 Cone-Chr20:2541111 0 dispersed
Cone20ag0475 Cone-Chr20:2541111 Cone6ag1580 Cone-Chr6:12317946 5.26E-284 dispersed
Cone20ag0474 Cone-Chr20:2524751 Cone20ag0475 Cone-Chr20:2541111 1.49E-177 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0475 K17469 - cit:102620800 866.3