Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0480 ATGAGCTCTCCATCAACTCAACTTTCACCTTCAACAAGGATGGGTATCTATGAGCCACTTCATCAGATTAGTCATTGGGGAAATGCCATGAAGGGTCACAGTAACTTAGACCCGAGCACATCAGCTATGGTAAAGGTGGATCCTGTTCCTATCCTAAACAGTCAGCATGAATGCCTTTCCCCTGAATCAATGGAACAATTGATGAGCAATCAAGGGACGTCCCGCAAACCAATTGATAAGATACAGAGACGCTTGGCTCAAAATAGAGAAGCTGCTCGTAAAAGTCGTATACGAAAAAAGGCTTATGTCCAACAATTAGAAACGAGCCGATTAAAACTGGCACAGTTAGAGCAGGAACTAGAGAGAGCCAGACAGCAGGGTGTATATGCGATAGATACTAGTCACTTGGGATTGTGTGGAACATTAATCCCAGGAATTGCTGCATTTGAGATGGAGTACTATCATTGGGTTGACGAGCAAACCAAACAGATATGTGAACTCCGGAGCGCATTGCAAATTCCCATAAGTGATATAGATCTTCACATTCTGGTTGACAATGGTTTCAACCACTACTACAATCTTTTCCGCATGAAAGCAGATGCCGCGAAGGATGATGTTTTCTACTTATTGTCAGGAATGTGGGTCACATCGGCCGAGCGCTTTTTCCTCTGGATTGGAGGTTTCCGCCCTTCGGAGATTCTAAATATACTGATGCCACATTTAGAGCCCTTAACGGATCAACAAGTACCCAAAATATTTAACCTCAAACAGTCATCTCAACAAGCAGAAGATGCTCTCTCAGGAGGAATGGATAAACTGAACCAGACTCTGGCTCATAGCATATCGGCCTATACAGAGGCAGTAGAGAAAATAGACGCTTTGGAGAGCCAGCCGAGTGTGTGTTGCTGTTTTCTGGAACAGGCGGACCATCTCAGGCAACAAACCTTGCAAAGGATGTCTCATATTTTAACAACAAACCAGGCGGCTAGAGCCATTGTAGCCCTTGGGGAGTACTTTCACCGTCTTCGAGCTCTGAGCTCGCTCTGGGCAACTCGACCCCATGAACAACCTGTCTAA 1077 45.13 MSSPSTQLSPSTRMGIYEPLHQISHWGNAMKGHSNLDPSTSAMVKVDPVPILNSQHECLSPESMEQLMSNQGTSRKPIDKIQRRLAQNREAARKSRIRKKAYVQQLETSRLKLAQLEQELERARQQGVYAIDTSHLGLCGTLIPGIAAFEMEYYHWVDEQTKQICELRSALQIPISDIDLHILVDNGFNHYYNLFRMKADAAKDDVFYLLSGMWVTSAERFFLWIGGFRPSEILNILMPHLEPLTDQQVPKIFNLKQSSQQAEDALSGGMDKLNQTLAHSISAYTEAVEKIDALESQPSVCCCFLEQADHLRQQTLQRMSHILTTNQAARAIVALGEYFHRLRALSSLWATRPHEQPV 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2568276 2571404 + Conep20aG0049500.1 Cone20ag0480 460384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0480 358 PANTHER TRANSCRIPTION FACTOR TGA9 1 356 - -
Cone20ag0480 358 Coils Coil 99 126 - -
Cone20ag0480 358 Gene3D - 79 128 - -
Cone20ag0480 358 FunFam BZIP family transcription factor 79 128 - -
Cone20ag0480 358 ProSiteProfiles DOG1 domain profile. 146 352 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone20ag0480 358 Pfam bZIP transcription factor 80 117 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0480 358 CDD bZIP_HBP1b-like 80 129 - -
Cone20ag0480 358 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 78 122 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0480 358 SUPERFAMILY Leucine zipper domain 80 121 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0480 358 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 83 98 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0480 358 SMART brlzneu 76 136 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0480 358 Pfam Seed dormancy control 163 238 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0745 Cone-Chr12:6847559 Cone20ag0480 Cone-Chr20:2568276 3.73E-108 dispersed
Cone20ag0480 Cone-Chr20:2568276 Cone8ag0792 Cone-Chr8:7958365 5.20E-108 dispersed
Cone17ag1246 Cone-Chr17:8978604 Cone20ag0480 Cone-Chr20:2568276 8.18E-232 wgd
Cone20ag0480 Cone-Chr20:2568276 Cone4ag1363 Cone-Chr4:11088249 3.37E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45597 PF01145 Band_7 4.80E-18 CL0433 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0480 K14431 - vvi:100255706 432.565