Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0489 ATGGCAATGGAGAACTCAAGCAAATGGGTGTTTACAATATTGGTCTTTTCTTGTGTTGTGTTTGTTTCTAGTGCCAGAGTGAATCCCAGCTTTAAAATCAGAGCCGTGAACTTGGGTGGTTGGCTTGTGACAGAGGGTTGGATCAAGCCTTCTCTCTTTGATGGAATTCCCAATAAGGACTTCTTAGATGGAACCCAGCTTCAATTTAAGTCCGTAACAATTGGAAAGTATCTTTGTGCCGAGTTAGGCGGAGGATCCATCATCGTGGCCAACCGGACATCCCCTTCGGGTTGGGAGACATTTAAATTGTGGAGGATCGATGAGAATACCTTCAACTTTAAGGTCTTTTTCAATCAGTTCATAGGACTTGACACCAAAGGCAATGGAGTTGATGTAGTAGCCGTTTCGACCACACCTGGAGTTTCCGAAACGTTCCAAATCGTGAGGAACTCTAATGATCCAAGCCGTGTCCGAATCAAGGCATCAAATGGGCTTTTCTTACAGGCAAAGACAGAGGATTTGGTGACTGCTGATTTCGTGGGGGATAGTGAATGGGGAGACAACGATCCGTCCGTGTTTGTGATAACTAATGTCGGGGGGTTACAAGGCGAGTTTCAAGTGACTAATGGTTATGGAAGTAAAGCTTCACAAGTTATGAAGGATCACTGGACTACATACATAGTTGAAGAGGACTTCAAGTTCATTTCCAAAAATGGTTTGAATGCCGTGAGAATTCCCGTTGGCTGGTGGATAGCGAGCGACCCAACCCCACCGTGGCCTTATGTTGGTGGATCCTTGCAAGCGCTTGACAATGCCTTTTCATGGGCTCAGAAATATGGGTTAAAAATCATAGTCGATCTACACGCGGCTCCTGGATCTCAAAACGGGTTTGAACACAGTGCTTCGAGAGATGGCTCTCAAGAGTGGGGAACAACAGACGCAAACATACAACAAACGGTTGCCGTCATAGACTTCTTAACTGCTAGGTACGCGAAGCGCTCAAGCCTATACGCAGTGGAGTTGATCAACGAGCCCTTATCCCCAGGAGTCACCTTAGACAGCTTGACCAAGTACTACAAGGCAGCCTACAACGCAGTCCGAAAGTACACATCCACGGCTTATGTCATCCTGTCTAACCGGCTTGGTCCCATGGAACCCAGAGAACTCTTCACCCTAGCCAGTGGGTTCACGAGGTCTGTTGTCGATGTTCATTACTACAACCTCTTCACTAGTGATTTCAATGGCTTGAGTGTGCAACAAAACATCGACTTCATCAACACAAACCGAACCGCACAATTGAATTACGTTACTACAGCAGACGGGCCTTTGACATTTGTTGGTGAATGGGTAGCAGAGTGGCAAGTGAGTGGGGCGAGTAAAGAGGATTATCAGAGATTCGCTAAAGCTCAACTGGATGTTTGGGGAACAGCAACATTTGGGTGGGCTTATTGGACACTTAAGAATGTGAACAACCATTGGAGCCTAGAGTGGATGATCCAAAATGGTTACATTACACTTTAG 1521 46.15 MAMENSSKWVFTILVFSCVVFVSSARVNPSFKIRAVNLGGWLVTEGWIKPSLFDGIPNKDFLDGTQLQFKSVTIGKYLCAELGGGSIIVANRTSPSGWETFKLWRIDENTFNFKVFFNQFIGLDTKGNGVDVVAVSTTPGVSETFQIVRNSNDPSRVRIKASNGLFLQAKTEDLVTADFVGDSEWGDNDPSVFVITNVGGLQGEFQVTNGYGSKASQVMKDHWTTYIVEEDFKFISKNGLNAVRIPVGWWIASDPTPPWPYVGGSLQALDNAFSWAQKYGLKIIVDLHAAPGSQNGFEHSASRDGSQEWGTTDANIQQTVAVIDFLTARYAKRSSLYAVELINEPLSPGVTLDSLTKYYKAAYNAVRKYTSTAYVILSNRLGPMEPRELFTLASGFTRSVVDVHYYNLFTSDFNGLSVQQNIDFINTNRTAQLNYVTTADGPLTFVGEWVAEWQVSGASKEDYQRFAKAQLDVWGTATFGWAYWTLKNVNNHWSLEWMIQNGYITL 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2611244 2613468 - Conep20aG0050400.1 Cone20ag0489 460393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0489 506 Pfam Cellulase (glycosyl hydrolase family 5) 218 488 IPR001547 GO:0000272(InterPro)|GO:0004553(InterPro)
Cone20ag0489 506 Gene3D Glycosidases 189 506 - -
Cone20ag0489 506 SUPERFAMILY (Trans)glycosidases 30 505 IPR017853 -
Cone20ag0489 506 FunFam Glucan 1,3-beta-glucosidase A 189 506 - -
Cone20ag0489 506 SUPERFAMILY Actin-crosslinking proteins 65 181 IPR008999 -
Cone20ag0489 506 PANTHER FASCIN 31 506 IPR010431 GO:0005737(PANTHER)|GO:0007015(InterPro)|GO:0007163(PANTHER)|GO:0015629(PANTHER)|GO:0016477(PANTHER)|GO:0051015(PANTHER)|GO:0051015(InterPro)|GO:0051017(PANTHER)
Cone20ag0489 506 FunFam Glucan 1,3-beta-glucosidase A 44 186 - -
Cone20ag0489 506 Gene3D - 44 187 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0489 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag1460 Cone-Chr9:10822115 Cone20ag0489 Cone-Chr20:2611244 7.35E-160 transposed
Cone17ag1235 Cone-Chr17:8945875 Cone20ag0489 Cone-Chr20:2611244 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g378 . . . . Bpe02g00094 . . Bma01g02623 . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1235 Cone20ag0489 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015720 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 7