Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0491 ATGGCTAGATTTGTTCTGATACTCGCATTGTGTGTGTTGCCGGCGATCGTTGGCGCCGTCCGGCCGGTGAGAAACCCGCTCGTAGTGGAAGGGAAAGTGTACTGCGACGCTTGCCGTGCTGGTTTCGAGACATCTGCTGCCACCTACATAGCTGGTGCCAAAGTCAGAGTGGAATGCAAAAGCAGGAAAACATTGGAACTTGTATACAGCCAAGAGGCCAAGACTGACTCTTCCGGAACCTACAAAATCTTGGTCTCAGAGGAGCACTCAGACCAGCTGTGTGATGCCCTACTGGTCAGCAGCCCCATCAAGGACTGCTCCTCACCATCCGAAGGGCGAGACAGATCCCGTGTGATCCTCACTAGCTACAATGGAATCGTATCGCAGACCCGTTATGCCAATGCCATGGGCTTCATGAAAGACCAGGCTCTTAATGGATGCCACCAAATTCTCAGCCAATATCAGGAAGAAAACTTTTAA 480 51.46 MARFVLILALCVLPAIVGAVRPVRNPLVVEGKVYCDACRAGFETSAATYIAGAKVRVECKSRKTLELVYSQEAKTDSSGTYKILVSEEHSDQLCDALLVSSPIKDCSSPSEGRDRSRVILTSYNGIVSQTRYANAMGFMKDQALNGCHQILSQYQEENF 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2624223 2626400 + Conep20aG0050600.1 Cone20ag0491 460395

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0491 159 PANTHER PROTEIN DOWNSTREAM OF FLC-RELATED 4 158 IPR006041 -
Cone20ag0491 159 Pfam Pollen protein Ole e 1 like 29 112 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0491 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0790 Cone-Chr12:7242955 Cone20ag0491 Cone-Chr20:2624223 5.03E-46 dispersed
Cone20ag0491 Cone-Chr20:2624223 Cone5ag1659 Cone-Chr5:11775977 1.62E-31 dispersed
Cone17ag1234 Cone-Chr17:8941127 Cone20ag0491 Cone-Chr20:2624223 4.14E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g379 . Blo12g00697 . Bda03g00502 Bpe02g00095 Bpe04g00457 . . Cmo05g00507 Cmo12g00113 . . . Car12g00133 Sed04g0127 . Cpe07g00120 Bhi04g00736 Tan02g2367 Cmetu03g1991 . Hepe10g0520 . Lcy13g1582 Cla08g01092 Cam08g1545 Cec08g1119 Cco08g1246 Clacu08g1247 . Cre08g1029 . . Cone17ag1234 Cone20ag0491 . . . Cme03g01505 . Blo18g00213 . Bda01g01393 Bpe02g01607 . . . . . . Cma12g00143 Cma05g00485 Car05g00432 . Cpe11g00424 . . . . . . . . . . . . . . . Lsi08g00948 . Chy03g01015 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005917 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 1 1 1 38