Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0497 ATGGATTTACAGAATAGCAACATACTTGAATCAGGCGGAGCGTCGGCCGCGTTTGGTGGTGAGTTAATGGAAGCACTTGCGCCTTTTATGAAAAGTGCTTTTCCAACCTCATCTCTTCCTCCTTCCCCAGCCCCATTTCCTTCTTACCTTCCTCCTTCGACTGCTTCTCTCTCCTTTCCTTCCGCCCAAACACAGCCCGCTTATTCTTACTCAGACGGTTGCTCCTCCTCTTCGTCGGCCCATTTATTTTCAGACGGATTCTCGGTCCAACAAAACCTTTTCGGTTTCGAGCAACCATCTGGGTCTGGTATTGAGCTTAACCACTTGATTCAAACCCAAATACCATCCCAAATAGAATGGGCCCAGCCCAATCATCACCAACCGCTTCCAGAGTACCAGCCCAACACCCTCAGCTTCTTAGGCCCAACACCTGTTTTGATGAAGCAGTCGGGTTCTCCTCCGAAACCCGTTAAGCTTTACCGGGGGGTCCGGAAACGGCATTGGGGAAAATGGGTCGCCGAGATCCGACTTCCGAGGAACCGGAGCAGGCTCTGGCTCGGCACCTTCGACACGGCTGAAGAAGCCGCCTTTGCCTATGACAGGGCGGCTTATAAGCTGCGAGGCGATTCGGCTAGGCTCAATTTTCCTCATATCAAGGACCAAGTCTCCTCCTCCGAATTCGGCGGCCATTTCAAACAGCTGCATTCTTCTGTTGATGCGAAGCTTGAGGCCATTTGTGAAACCTTGGCGAAATCACAGAAACAGGGGAAGAAAAAAAAGGAGGAAACCAGGTCCGAGGGAAAGAAGTTGCGGAAGGCGGTGGTTGCAAGGGATGAGAAGCAGAAGGAGGTGGTAGTGAGGATGAAGGTTGATTATTTATCAAGTGATGGGTCTGGTGGGGCAATTTCTTCGCCATTGTCGGATCTTACTTTTCCTTCCGATCTGACAGAGACGACATGGGATCATCATCAATCTTCGGAGAATGTCACGTTGGAGAAATATCCGTCCGAGATTGATTGGGATTCTATATTTACTTAA 1038 50.0 MDLQNSNILESGGASAAFGGELMEALAPFMKSAFPTSSLPPSPAPFPSYLPPSTASLSFPSAQTQPAYSYSDGCSSSSSAHLFSDGFSVQQNLFGFEQPSGSGIELNHLIQTQIPSQIEWAQPNHHQPLPEYQPNTLSFLGPTPVLMKQSGSPPKPVKLYRGVRKRHWGKWVAEIRLPRNRSRLWLGTFDTAEEAAFAYDRAAYKLRGDSARLNFPHIKDQVSSSEFGGHFKQLHSSVDAKLEAICETLAKSQKQGKKKKEETRSEGKKLRKAVVARDEKQKEVVVRMKVDYLSSDGSGGAISSPLSDLTFPSDLTETTWDHHQSSENVTLEKYPSEIDWDSIFT 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2660368 2662027 + Conep20aG0051200.1 Cone20ag0497 460401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0497 345 MobiDBLite consensus disorder prediction 252 273 - -
Cone20ag0497 345 SMART rav1_2 159 222 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0497 345 Pfam AP2 domain 159 208 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0497 345 FunFam Ethylene-responsive transcription factor 2 158 217 - -
Cone20ag0497 345 MobiDBLite consensus disorder prediction 251 273 - -
Cone20ag0497 345 Gene3D AP2/ERF domain 159 218 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0497 345 SUPERFAMILY DNA-binding domain 159 217 IPR016177 GO:0003677(InterPro)
Cone20ag0497 345 ProSiteProfiles AP2/ERF domain profile. 159 216 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0497 345 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 15 343 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cone20ag0497 345 PRINTS Ethylene responsive element binding protein signature 160 171 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0497 345 PRINTS Ethylene responsive element binding protein signature 182 198 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0497 345 CDD AP2 158 217 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0497 Cone-Chr20:2660368 Cone6ag0849 Cone-Chr6:4331686 2.17E-36 dispersed
Cone17ag1230 Cone-Chr17:8918498 Cone20ag0497 Cone-Chr20:2660368 1.88E-193 wgd
Cone20ag0497 Cone-Chr20:2660368 Cone4ag1350 Cone-Chr4:11006044 2.18E-81 wgd
Cone20ag0497 Cone-Chr20:2660368 Cone6ag1574 Cone-Chr6:12274587 8.81E-55 wgd
Cone20ag0497 Cone-Chr20:2660368 Cone7ag1581 Cone-Chr7:10838004 2.95E-84 wgd
Cone20ag0497 Cone-Chr20:2660368 Cone9ag1493 Cone-Chr9:10975569 2.05E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45599 PF01633 Choline_kinase 5.30E-69 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0497 K09286 - csv:101214560 287.73