Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0500 ATGAAGAACTCCCTACTTTTCTTCTTCCCCTTTGTATTTCTGGTTTCAATATCGAACACAGTTTTCTCCTCTGTTTCTGCTTCTGAGGAAGAAGCTAATGCTCTCCTTAAATGGAAAGCCACCTTTCAAAATCAAACCCAGTCTAAATTATCTTCCTGGATTTCCTTACCCGAAAACAGCAACCAAAGCTTAAGTCCGTGCAATTGGTATGGAGTTAATTGCAACTCTAATGAAAGCATCATCAGAATCAACCTGACTACCTCTGGTTTACAAGGAACGCTTGACGAGTTCTCCTTCTCATCCTTCCCTAATCTTGCATATTTCGAGCTCAGCGTGAATACCTTCTTCGGAACAATCCCGCCTCAAATCAGCAACCTCTCCAAATTAATATATCTCGATTTCTCCCTCAATCAATTTTCTGGGAATATCCCACCTGAAATCGGGCTGTTAAGAAATCTTCAAGTTCTCCATCTTGTTGTGAATCAGTTGAATGGGTCAATACCTCAAGAAATAGGCCAGCTAAGCTCTCTCACTGAGTTAGCTATTTACACCAATAATCTTCAGGGTCCTCTTCCACCTTCTATAGGAAACTTGAGCAACATGGAACATTTGTTTCTCTATGACAATCAATTTTCCAGTTTCATTCCAGAAGAAATGGGAAATCTTTCAAACTTGTTGGAGCTTTATATGAACGGGGGCAGTTTGAAGGGTCCAATCCCTACATCCTTCGGAAATCTTAAGAAACTAAATGTGTTGTATATGTTTGACAACGACCTTTCTGGGCTTATTCCCGAAGAGCTGGGAAATTTAGAAAATCTCATCTCTTTAAGCTTACAAACAAATCATCTTTCTGGGTCAATCCCAGCTTCATTGGGTAACCTCAGAAACCTTACCCTTCTTCATCTATATAAGAATCAACTCACCGGGCCCATCCCAAAAGAGCTTGGAAACTTGACGTTGATGGAAGACTTAGAGCTCAGTCAGAATCATCTCAATGGCGCTATTCCAGTTTCACTAGCTCAACTAATCAATTTGAAGATCCTGTTTCTTCGTGACAATGAACTATCTGGTTTAATTCCGAAAGAATTCGAAAATTTGACCCAGTTGGAAATATTGCAACTGGACACTAATAGATTTACCGGAAATGTGCCAGATAGCTTCTGTTCAGGAGGAATACTTCAGAATTTCACTCTCAACGACAACAACCTCACTGGCCCGATTCCACAAAGCTTAACAAATTGCTCGAGCCTGGTCCGGTTTCGCCTAAATAATAATCAGTTCAGTGGAAATATTTCTGAAGATTTTGGTGTCTATCCAGATCTTGACTTCATTGATCTAAGCAATAACAGATTTTACGGCGAAATCTCTCCTAAATGGGGAAAATGTCCTAAATTAGCGTCTCTCCTTCTTGGCCAAAACAACGTTTCCGGTCAGTTACCTCCTGAGATTTCAAACTCTACTCAACTCCATGTACTTGATTTATCTTTCAATCAATTAGAAGGAGCAATCCCAAAGGAAATTGGAAGGTTGACTTCCTTAGTGACTCTGTTGATGAATGGAAACCAACTTTCCGGTCAAATTCCTTCAGAGTTCGGAGCATTAACTGATCTTGAACGCCTAGACGTGTCATCGAATAGATTGAGTGCGTCAATTCCAAGCTTTTTAGGCGAATTCTCCAATTTGAATTACTTGAACCTGAGCAATAACAGGTTCAATCGAGCAATTCCGGGCGAGCTAGGGAGCCTGATTCATCTTTCTCAGCTCGATTTGAGTTACAACTCGCTGAATGGAACGATACCATCAGAAATCGGACAAATGCAGAGCTTGGAGATGCTTAATATCTCTCACAACAATCTTTCAGGTTCGATTCCGAAAACTTTTGAAGAAATGTCTGGATTGCTCTTCATCGACATATCTCACAATCAGTTACAAGGTCCTCTTCCAAACACGACTGCGTTTCAGAAAGCTCCAATCCAAGCCCTAGAAGGCAACACTGGCTTATGCGGCAGCGTAGAGCTTCCAGACTGTAATTCTTCTTCAACTGCGCCCGCGCCCCATAAAAAGTCGAAAAACAACCGAAAGCTCGTCTTCCTAATCGTTTTCCCTCTTCTAGGAGCAGTTCTTCTTCTCCTGTTAATTTTCATCGGAATTTTCATGGCGATTAGAAGAACGAGAGATCGGGAAATCGAAAACGGCAGCACAGAAGGAAAATTCTTTTCGATTCCGAATTATTCAGACAGATCACTATACGAAGAAATCATCAAAGCGACTGGAGATTTCGATTCGAAATATTCCATCGGGAAAGGAGGATCCGGAACTGTTTACAAGGCCCAACTAAAATCCGGCGAAATCGTAGCAGTAAAGAAACTACATGTCGTTCAACAAGAGATCATTCCCGAAACGATATCTCCATCTCCTTCACCATCATCGTCACTTCCAAAGGAGTTTCTGACCGAGATAACGGCATTAATCGAGATACGGCACCGGAACATCGTGAAGCTTCGTGGATTCTTCTCGAATGCTAGAAATTCAATTCTGGTTTATGAGTACTTGGAGAGAGGAAGCTTGGGAGAAGTATTGAGCAGAGACGATGACGCTAAGGGACTGGATTGGATGAAGAGGATGAATGTGTTGAAAGGCGTCGCCTTTGCTCTGTCGTACATGCACCATGATTGTGTGCCGCCAATTGTTCATCGAGATATCTCCAGCAATAATATTTTGCTTGATTTGGAGTATGAAGCTTGTGTTTCTGATTTCGGCATTGCTAGACTTCTCAACCCTGACTCCTCCAACTGGACTGCCATGGCGGGAACTTATGGATATCTAGCGCCAGAATTTGCCTATACAATGAAAGTGACGGAAAAGTGCGATGTTTATAGTTTTGGAGTGTTAGCACTGGAAGTGATAAGGGGAAAACATCCGGGTGATCTCATCTCTTCTCTGTTCTCCGTGCCGGTTAAAGGTAAGAAAACAATGGATGACTTGTTAGATCAACGACTTCCGGCTCCGACTCGTGACATCGAGAATGAATTGATAAACATTGTAAGGATTGCAAAGGCATGTTTGAGTGAAAATCCTGATTCAAGACCTACCATGCATATGGTGTCTCAAGCTTTATCAAGTTGTGTAGATGACTTGCCCATTTCCAAAACGTGA 3156 41.83 MKNSLLFFFPFVFLVSISNTVFSSVSASEEEANALLKWKATFQNQTQSKLSSWISLPENSNQSLSPCNWYGVNCNSNESIIRINLTTSGLQGTLDEFSFSSFPNLAYFELSVNTFFGTIPPQISNLSKLIYLDFSLNQFSGNIPPEIGLLRNLQVLHLVVNQLNGSIPQEIGQLSSLTELAIYTNNLQGPLPPSIGNLSNMEHLFLYDNQFSSFIPEEMGNLSNLLELYMNGGSLKGPIPTSFGNLKKLNVLYMFDNDLSGLIPEELGNLENLISLSLQTNHLSGSIPASLGNLRNLTLLHLYKNQLTGPIPKELGNLTLMEDLELSQNHLNGAIPVSLAQLINLKILFLRDNELSGLIPKEFENLTQLEILQLDTNRFTGNVPDSFCSGGILQNFTLNDNNLTGPIPQSLTNCSSLVRFRLNNNQFSGNISEDFGVYPDLDFIDLSNNRFYGEISPKWGKCPKLASLLLGQNNVSGQLPPEISNSTQLHVLDLSFNQLEGAIPKEIGRLTSLVTLLMNGNQLSGQIPSEFGALTDLERLDVSSNRLSASIPSFLGEFSNLNYLNLSNNRFNRAIPGELGSLIHLSQLDLSYNSLNGTIPSEIGQMQSLEMLNISHNNLSGSIPKTFEEMSGLLFIDISHNQLQGPLPNTTAFQKAPIQALEGNTGLCGSVELPDCNSSSTAPAPHKKSKNNRKLVFLIVFPLLGAVLLLLLIFIGIFMAIRRTRDREIENGSTEGKFFSIPNYSDRSLYEEIIKATGDFDSKYSIGKGGSGTVYKAQLKSGEIVAVKKLHVVQQEIIPETISPSPSPSSSLPKEFLTEITALIEIRHRNIVKLRGFFSNARNSILVYEYLERGSLGEVLSRDDDAKGLDWMKRMNVLKGVAFALSYMHHDCVPPIVHRDISSNNILLDLEYEACVSDFGIARLLNPDSSNWTAMAGTYGYLAPEFAYTMKVTEKCDVYSFGVLALEVIRGKHPGDLISSLFSVPVKGKKTMDDLLDQRLPAPTRDIENELINIVRIAKACLSENPDSRPTMHMVSQALSSCVDDLPISKT 1051
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2712519 2716534 - Conep20aG0051500.1 Cone20ag0500 460404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0500 1051 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 387 680 - -
Cone20ag0500 1051 ProSiteProfiles Protein kinase domain profile. 760 1043 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0500 1051 FunFam MDIS1-interacting receptor like kinase 2 851 1044 - -
Cone20ag0500 1051 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 193 286 - -
Cone20ag0500 1051 Gene3D Ribonuclease Inhibitor 149 228 IPR032675 -
Cone20ag0500 1051 Gene3D Transferase(Phosphotransferase) domain 1 851 1047 - -
Cone20ag0500 1051 Pfam Leucine Rich Repeat 248 270 IPR001611 GO:0005515(InterPro)
Cone20ag0500 1051 Pfam Leucine Rich Repeat 489 510 IPR001611 GO:0005515(InterPro)
Cone20ag0500 1051 Pfam Leucine Rich Repeat 512 534 IPR001611 GO:0005515(InterPro)
Cone20ag0500 1051 Pfam Leucine Rich Repeat 200 222 IPR001611 GO:0005515(InterPro)
Cone20ag0500 1051 Pfam Leucine Rich Repeat 272 294 IPR001611 GO:0005515(InterPro)
Cone20ag0500 1051 Pfam Leucine Rich Repeat 344 366 IPR001611 GO:0005515(InterPro)
Cone20ag0500 1051 Pfam Leucine Rich Repeat 296 318 IPR001611 GO:0005515(InterPro)
Cone20ag0500 1051 Pfam Leucine Rich Repeat 128 148 IPR001611 GO:0005515(InterPro)
Cone20ag0500 1051 Gene3D Phosphorylase Kinase; domain 1 723 850 - -
Cone20ag0500 1051 SUPERFAMILY RNI-like 311 648 - -
Cone20ag0500 1051 SUPERFAMILY Protein kinase-like (PK-like) 740 1039 IPR011009 -
Cone20ag0500 1051 FunFam Leucine-rich repeat receptor protein kinase MSP1 723 850 - -
Cone20ag0500 1051 SMART LRR_typ_2 270 293 IPR003591 -
Cone20ag0500 1051 SMART LRR_typ_2 534 556 IPR003591 -
Cone20ag0500 1051 SMART LRR_typ_2 558 582 IPR003591 -
Cone20ag0500 1051 SMART LRR_typ_2 150 174 IPR003591 -
Cone20ag0500 1051 SMART LRR_typ_2 366 389 IPR003591 -
Cone20ag0500 1051 SMART LRR_typ_2 510 533 IPR003591 -
Cone20ag0500 1051 SMART LRR_typ_2 198 222 IPR003591 -
Cone20ag0500 1051 SMART LRR_typ_2 246 269 IPR003591 -
Cone20ag0500 1051 SMART LRR_typ_2 294 318 IPR003591 -
Cone20ag0500 1051 SMART LRR_typ_2 342 365 IPR003591 -
Cone20ag0500 1051 SMART LRR_typ_2 606 629 IPR003591 -
Cone20ag0500 1051 Gene3D Ribonuclease Inhibitor 390 680 IPR032675 -
Cone20ag0500 1051 Gene3D Ribonuclease Inhibitor 229 389 IPR032675 -
Cone20ag0500 1051 ProSitePatterns Protein kinases ATP-binding region signature. 766 789 IPR017441 GO:0005524(InterPro)
Cone20ag0500 1051 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 338 1040 IPR051716 -
Cone20ag0500 1051 Gene3D Ribonuclease Inhibitor 30 148 IPR032675 -
Cone20ag0500 1051 FunFam Nuclear pore complex protein NUP107 28 192 - -
Cone20ag0500 1051 ProSitePatterns Tyrosine protein kinases specific active-site signature. 896 908 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0500 1051 Pfam Leucine rich repeat 605 643 IPR001611 GO:0005515(InterPro)
Cone20ag0500 1051 Pfam Leucine rich repeat 537 595 IPR001611 GO:0005515(InterPro)
Cone20ag0500 1051 FunFam MDIS1-interacting receptor like kinase 2 isoform A 287 386 - -
Cone20ag0500 1051 SMART LRR_sd22_2 294 326 - -
Cone20ag0500 1051 SMART LRR_sd22_2 342 368 - -
Cone20ag0500 1051 SMART LRR_sd22_2 606 632 - -
Cone20ag0500 1051 SMART LRR_sd22_2 534 563 - -
Cone20ag0500 1051 SMART LRR_sd22_2 198 224 - -
Cone20ag0500 1051 PRINTS Leucine-rich repeat signature 606 619 - -
Cone20ag0500 1051 PRINTS Leucine-rich repeat signature 585 598 - -
Cone20ag0500 1051 Pfam Protein kinase domain 763 1037 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0500 1051 Pfam Leucine rich repeat N-terminal domain 29 75 IPR013210 -
Cone20ag0500 1051 SUPERFAMILY L domain-like 53 384 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1259 Cone-Chr17:9063232 Cone20ag0500 Cone-Chr20:2712519 5.83E-136 dispersed
Cone17ag1262 Cone-Chr17:9087604 Cone20ag0500 Cone-Chr20:2712519 2.47E-136 dispersed
Cone20ag0469 Cone-Chr20:2468433 Cone20ag0500 Cone-Chr20:2712519 1.52E-86 dispersed
Cone20ag0500 Cone-Chr20:2712519 Cone7ag0530 Cone-Chr7:2460225 3.11E-92 dispersed
Cone10ag0539 Cone-Chr10:2517054 Cone20ag0500 Cone-Chr20:2712519 8.77E-167 transposed
Cone20ag0773 Cone-Chr20:5443033 Cone20ag0500 Cone-Chr20:2712519 5.03E-90 transposed
Cone17ag1151 Cone-Chr17:8480964 Cone20ag0500 Cone-Chr20:2712519 3.83E-59 wgd
Cone17ag1224 Cone-Chr17:8867978 Cone20ag0500 Cone-Chr20:2712519 9.42E-253 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82544 PF00153 Mito_carr 1.00E-16 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0500 - - - 0.0