Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone20ag0507 | ATGGAGGATTATCATGTAGCTAAGTTTCTTAATACTCAAGGACATGAATTAGGACTCTTTGCGCTCTTTGATGGTCACTTGGGCCATCAAGTTCCGGCCTACTTACAAAAACATCTGTTTTCCAACATCCTGAAAGAGAATGAGTTCTGGGTGGACCCCAAAAGTTCTATCTCTAATGCATACGAGAAGACAGACAAAGCAATTATCTCCGGTAGCAATGACCTCGGGCGAGGCGGGTCCACTGCTGTAACTGCCATTCTGATCAACGGACAGAGATTATTGGTAGCCAATCTGGGAGATTCCCGGGCAGTTCTTTCCAGAGGAGGTCAAGCCGTGCAGATGACTACTGACCATGAGCCCCATACTGAACGACGAACCATCGAGAAAAAAGGCGGCTTTGTTTCAAACATGCCAGGTGATGTGCCTAGAGTTAATGGACAGCTTGCGGTCTCTCGGGCTTTTGGGGACGAGGGCCTTAAAACTCATTTAAGGTCAGACCCGGACATACAAGATGCCACCATTGATATCAATACTGATGTGCTAATTCTTGCAAGTGATGGCCTTTGGAAGGTGATGGAAAATCAAGAGGCAGTTGATATTGCAAGAAGGGTCAAGGATCCATTGAAGGCTGCTAAGTGTTTAACAGCTGAAGCTTTGAAGAGGGAGAGTAGAGATGACATTTCTTGCATTGTTGTCAGATTTGGATGA | 708 | 45.76 | MEDYHVAKFLNTQGHELGLFALFDGHLGHQVPAYLQKHLFSNILKENEFWVDPKSSISNAYEKTDKAIISGSNDLGRGGSTAVTAILINGQRLLVANLGDSRAVLSRGGQAVQMTTDHEPHTERRTIEKKGGFVSNMPGDVPRVNGQLAVSRAFGDEGLKTHLRSDPDIQDATIDINTDVLILASDGLWKVMENQEAVDIARRVKDPLKAAKCLTAEALKRESRDDISCIVVRFG | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 2741321 | 2743111 | + | Conep20aG0052200.1 | Cone20ag0507 | 460411 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone20ag0507 | 235 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 234 | IPR001932 | - | |
| Cone20ag0507 | 235 | Pfam | Protein phosphatase 2C | 1 | 227 | IPR001932 | - | |
| Cone20ag0507 | 235 | SUPERFAMILY | PP2C-like | 1 | 235 | IPR036457 | - | |
| Cone20ag0507 | 235 | FunFam | Probable protein phosphatase 2C 39 | 1 | 235 | - | - | |
| Cone20ag0507 | 235 | Gene3D | - | 1 | 235 | IPR036457 | - | |
| Cone20ag0507 | 235 | SMART | PP2C_SIG_2 | 3 | 234 | IPR001932 | - | |
| Cone20ag0507 | 235 | SMART | PP2C_4 | 1 | 232 | IPR001932 | - | |
| Cone20ag0507 | 235 | CDD | PP2Cc | 1 | 234 | IPR001932 | - | |
| Cone20ag0507 | 235 | PANTHER | PROTEIN PHOSPHATASE | 1 | 232 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone20ag0507 | Cone-Chr20:2741321 | Cone3ag1093 | Cone-Chr3:29567925 | 1.12E-124 | dispersed | |
| Cone17ag1218 | Cone-Chr17:8842993 | Cone20ag0507 | Cone-Chr20:2741321 | 2.18E-152 | wgd | |
| Cone20ag0507 | Cone-Chr20:2741321 | Cone4ag1335 | Cone-Chr4:10921634 | 8.43E-129 | wgd | |
| Cone20ag0507 | Cone-Chr20:2741321 | Cone7ag1594 | Cone-Chr7:10900747 | 7.36E-132 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone20ag0507 | K17506 | - | mdm:114821525 | 395.201 |