Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0520 ATGGAGCGGTATGAGATTGTGAAAGAGATTGGGGCAGGGAATTTTGGAGTAGCCAAGCTGGTTAGAGACAAGCTGTCTAGAGAGCTGTTTGCTGTTAAGTTCATTGAGAGAGGCCTCAAGATTGATGAGCATGTGCAGAGGGAAATCATGAATCATAGATCATTGAAGCATCCTAATATTGTCCGATTTAAAGAGGTTCTTCTAACACCAATTCATCTAGCCATAGTAATGGAGTATGCTGCCGGAGGTGAACTCTTCGAGAGGATATGCACCGCCGGTCGATTTAGCGAAGATGAGGCAAGGTTCTTCTTTCAGCAATTAATATCAGGGGTTAGTTACTGTCATTCAATGCAAATTTGTCATAGAGATCTTAAGCTTGAAAACACACTCTTAGATGGCAGCACAGCTCCTAGGGTGAAAATATGCGATTTTGGATACTCTAAGTCGGCTGTTTTGCATTCTCAACCAAAATCAACGGTTGGAACACCGGCTTATATCGCACCAGAGATTCTAACTAAGAAAGAATATGATGGAAAGATTGCAGATGTTTGGTCTTGTGGTGTTACATTGTATGTTATGCTAGTCGGAGCTTATCCCTTTGAAGATCCAGACGATCCAAGAAATTTCCGGAGAACAATCGGTCGGATACTTAGCGTCCATTATTCAATCCCGGATTATGTTCGGGTTTCCAAGGAATGTAGACATCTTCTATCACGTATGTTTGTAGCAAATCCCGAAAAGAGAATAACGATTCCGGAAATCAAGATGCATTCTTGGTTCTTGAAGAATTTGCCTATAGAATTGATGGAAGGAGGAATATGGCAGGGCAGCGATGTGAATGAACCTTCTCAAACAGTAGAAGAAGTGAGTTCAATTATACAAGAGGCAAGCAAATCTATAGAGGTGACCAAGGCTGGACTTGGCGGGCATCTCATTGGCAGCGATATCGACCTCGATGATTTGGATGCTGATGCCGATCTCGAAGATGTTGAAACCAGCGGTGATTTTGTGTGCAATCTATGA 1023 42.42 MERYEIVKEIGAGNFGVAKLVRDKLSRELFAVKFIERGLKIDEHVQREIMNHRSLKHPNIVRFKEVLLTPIHLAIVMEYAAGGELFERICTAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSTAPRVKICDFGYSKSAVLHSQPKSTVGTPAYIAPEILTKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPDDPRNFRRTIGRILSVHYSIPDYVRVSKECRHLLSRMFVANPEKRITIPEIKMHSWFLKNLPIELMEGGIWQGSDVNEPSQTVEEVSSIIQEASKSIEVTKAGLGGHLIGSDIDLDDLDADADLEDVETSGDFVCNL 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2810772 2814450 - Conep20aG0053600.1 Cone20ag0520 460424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0520 340 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Cone20ag0520 340 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524(InterPro)
Cone20ag0520 340 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Cone20ag0520 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0520 340 SMART serkin_6 4 260 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0520 340 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0520 340 FunFam Serine/threonine-protein kinase SRK2E 80 268 - -
Cone20ag0520 340 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 3 294 - GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cone20ag0520 340 SUPERFAMILY Protein kinase-like (PK-like) 1 270 IPR011009 -
Cone20ag0520 340 CDD STKc_SnRK2 3 259 - -
Cone20ag0520 340 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0520 K14498 - - cit:102622831 573.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0520 Cone-Chr20:2810772 Cone9ag0635 Cone-Chr9:3021999 1.34E-178 dispersed
Cone17ag1162 Cone-Chr17:8567212 Cone20ag0520 Cone-Chr20:2810772 1.14E-57 wgd
Cone20ag0520 Cone-Chr20:2810772 Cone6ag1553 Cone-Chr6:12169623 6.19E-193 wgd
Cone20ag0520 Cone-Chr20:2810772 Cone9ag1467 Cone-Chr9:10865249 4.39E-186 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g440 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0520 . . . . Blo17g00113 Blo18g00128 . Bda13g01394 . Bpe14g00461 Bma01g01397 Bma02g00133 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000065 7 16 8 7 7 11 10 10 11 8 11 11 10 12 10 9 11 14 10 10 9 6 8 6 7 11 4 12 10 7 283
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82545 PF00394 Cu-oxidase 1.60E-30 CL0026 Cone PK