Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0528 ATGGCCATAGAAACTGTCATTTACCCACAAGACATGAGTTCCATAAACAGCAATTATGCCTGCAAGAATTTCTACCCGCTAGAGCTAGAGCAAGATAATGATTGGGCTTATCATCATCATGATCATCATGACATGGTGTTACAAGAAGAAGATCATCACGACAATATTACTATTACCGGGAACATTAATTCTTCACCGGATCACCCCTCCACCGTCAATCTTCCAATGAAACGACAATCAACGACAGAAACCTGTCGTACTTCTACTACCGGTCGAAGGAAACGACGTCGCACTAAGAGCACGAAAAACCGTGAAGAGATCGAGAACCAGAGGATGACTCACATTGCCGTCGAGCGCAACCGCCGGAAACAGATGAACGACTACCTCGCCGTCCTCCGATCACTAATGCCGCCCTCCTACGTCCAAAGGGGTGACCAGGCATCTATTATTGGGGGAGCGATTAATTTTGTCAAGGAGCTAGAACAGCATCTGCAGTTCATGAAGGTGCAAACTAAGACAACAACGCAACAACCATCGGATAGTCACTCTTCTCCTAACTGTTCTCCTTTGGCCGAGTTATTCACTTTCCCTCAATACTCGACACGCGTAACTCAGGATCATCATCATCAGAATCGGGAATCAACGTCGGCGCAGATGAATCAGTACTGGGCCGTTGCTGACATAGAAGTGAACATGGTAGAAAGCCACGCAAATCTGAAAATACTGTCGAAAAAGCAGACGAAGCAGTTATTGAAAATGGTCTTAGGATTTCAAACTCTTCGACTGACTGTTCTTCACCTCAACGTTACCACTGTTGATCAGATGGTCCTCTACTCCATAAGCGTTAAGGTAGAGGAGGGTTGCCAGCTAAATACAGTGGATGAAATAGCAGCTGCCGTTAATCAAATGCTACATATTATTGAAGAAGAAGATGCTTAA 939 44.94 MAIETVIYPQDMSSINSNYACKNFYPLELEQDNDWAYHHHDHHDMVLQEEDHHDNITITGNINSSPDHPSTVNLPMKRQSTTETCRTSTTGRRKRRRTKSTKNREEIENQRMTHIAVERNRRKQMNDYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQHLQFMKVQTKTTTQQPSDSHSSPNCSPLAELFTFPQYSTRVTQDHHHQNRESTSAQMNQYWAVADIEVNMVESHANLKILSKKQTKQLLKMVLGFQTLRLTVLHLNVTTVDQMVLYSISVKVEEGCQLNTVDEIAAAVNQMLHIIEEEDA 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2865702 2866887 - Conep20aG0054400.1 Cone20ag0528 460432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0528 312 MobiDBLite consensus disorder prediction 61 87 - -
Cone20ag0528 312 Pfam Helix-loop-helix DNA-binding domain 110 161 IPR011598 GO:0046983(InterPro)
Cone20ag0528 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 160 IPR011598 GO:0046983(InterPro)
Cone20ag0528 312 SMART finulus 115 166 IPR011598 GO:0046983(InterPro)
Cone20ag0528 312 PANTHER MAX DIMERIZATION, MAD 63 305 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone20ag0528 312 MobiDBLite consensus disorder prediction 61 105 - -
Cone20ag0528 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 109 179 IPR036638 GO:0046983(InterPro)
Cone20ag0528 312 Gene3D - 95 177 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0749 Cone-Chr10:3791513 Cone20ag0528 Cone-Chr20:2865702 5.31E-65 dispersed
Cone20ag0528 Cone-Chr20:2865702 Cone5ag0020 Cone-Chr5:133301 2.74E-67 dispersed
Cone17ag1201 Cone-Chr17:8768360 Cone20ag0528 Cone-Chr20:2865702 2.89E-187 wgd
Cone20ag0528 Cone-Chr20:2865702 Cone4ag1316 Cone-Chr4:10820470 9.18E-80 wgd
Cone20ag0528 Cone-Chr20:2865702 Cone7ag1260 Cone-Chr7:9361322 1.18E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45601 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0528 - - - 0.0