Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0535 ATGGGTAGTAGCTTCAACAATGGGGACCAAGAGCGAGAGATCATTCTTACCCAATCCTTATTACCAGAAGCAGCAGTAAAGAATGACCATAACAACAATTTTTCAGAGCTCTGGATTAATGAACTGAAGAAGTTATGGAACATTCTGGGCCCTGCCATTGTGGTCCGCATTTCCGGCTACTCGATGATTGTCATCACCCAGGCTTTCGCCGGCCACCTTGGAGACGTCGAACTCGCCGCCTTCTCCGTCGCCCTCAATGTCATCATCGGCTTCACTTACGGGCTCTTGTTGGGAATGGCAAGCGCACTGGAGACGTTATGCGGTCAAGCTTACGGAGCGAAAAAATACGACATAATGAGCGTATATCTACAAAGGTCATGGATAGTATTGTTTTCATTTTCACTTTTGTTACTTCCTATCTACATCTTTGCCTCCCCGCTTTTGAAACTGCTCGGTCAGTCGTCGGAAGTGGCGGAGGCGACGGGCAAGGTGGCATTGTGGATGATACCGATGCATTTCAGCTTCGGGTTCCAGTTCACACTGCAGAGGTTCTTGCAGAGCCAGTTGAAGAACGCGGCCACGGCCTGGGTTGCAGTGGCAGGGTTGGTGGTCAATGCGGTTACAAGTTGGTTGTTTGTGTCAGTTTTGGATTTCGGTGTTGTTGGTGCGGCATTGGCCTTGGGACTTTCTTGGTGGGTTTCGGTTTTCGGGTTGCTTGCATACGCTGCTTACGGTGGGTGTCCTCTGACTTGGGCCGGGTTTTCAGTCGAAGCTTTTTCGGAGCTTTGGGATTTTATCAAACTCTCTGCTGCTTCTGGGGTCATGCTCTGGAAATTCCTTTGTTCCGTTTTGGTTGAATGGTGCAGTTTGGAGAATTGGTACTATAAGATACTGATATTGTTAGCAGGATACTTGAAGGATGCAACTATTGCTGTGGATGCTCTTTCTGTATGCATGTCTATCACTGGATGGGAGATGATGATTCCATTAGCTTTTCTTGCTGCCACCGGAATACGGGTAGCGAACGAATTAGGAAGAGGAAACGGAGAAGCAGCAAAATTTGCAACGACAGTTTCGGTAACACAATCGACCATAATCGGCCTGTTCTTTTGTCTACTCGTAATCATTTTGCGTGACAAGATCGCATATATCTTCACATCAAGCTCCGATGTTATACAAGCCGTAGACGATCTCTGGTATTTCTTGGTCCTTACCATTCTCCTCAACAGCGTCCAACCCGTTTTGTCAGGAGTGGCAGTAGGATCGGGATGGCAAGCAACGGTGGCGTATGTAAACCTGGGATGCTATTACATTGTAGGACTCCCGCTTGGCATTCTGTTTGGATGGACCCTACAATGGGGTGTCGCGGGCATATGGGCTGGGATGATATTTGGCGGGACCTTAATTCAAACGATCATACTGTCCTTTATAACGATACGGTGTAATTGGGAAAATGAGGCTGAAAAGGCAAGAATGCGTATACAGAAGTTATCAAGCCCAAACTATGATGATCAATCTGGCAGCCAATAA 1530 47.39 MGSSFNNGDQEREIILTQSLLPEAAVKNDHNNNFSELWINELKKLWNILGPAIVVRISGYSMIVITQAFAGHLGDVELAAFSVALNVIIGFTYGLLLGMASALETLCGQAYGAKKYDIMSVYLQRSWIVLFSFSLLLLPIYIFASPLLKLLGQSSEVAEATGKVALWMIPMHFSFGFQFTLQRFLQSQLKNAATAWVAVAGLVVNAVTSWLFVSVLDFGVVGAALALGLSWWVSVFGLLAYAAYGGCPLTWAGFSVEAFSELWDFIKLSAASGVMLWKFLCSVLVEWCSLENWYYKILILLAGYLKDATIAVDALSVCMSITGWEMMIPLAFLAATGIRVANELGRGNGEAAKFATTVSVTQSTIIGLFFCLLVIILRDKIAYIFTSSSDVIQAVDDLWYFLVLTILLNSVQPVLSGVAVGSGWQATVAYVNLGCYYIVGLPLGILFGWTLQWGVAGIWAGMIFGGTLIQTIILSFITIRCNWENEAEKARMRIQKLSSPNYDDQSGSQ 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2934404 2937158 - Conep20aG0055100.1 Cone20ag0535 460439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0535 509 CDD MATE_eukaryotic 41 489 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
Cone20ag0535 509 PANTHER MULTIDRUG RESISTANCE PROTEIN 34 486 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
Cone20ag0535 509 Pfam MatE 51 211 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cone20ag0535 509 Pfam MatE 290 445 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cone20ag0535 509 NCBIfam MATE family efflux transporter 51 459 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0535 K03327 - - cit:102612646 673.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0535 Cone-Chr20:2934404 Cone8ag0208 Cone-Chr8:1120557 5.27E-216 dispersed
Cone17ag1199 Cone-Chr17:8759756 Cone20ag0535 Cone-Chr20:2934404 0 wgd
Cone20ag0535 Cone-Chr20:2934404 Cone4ag1315 Cone-Chr4:10806673 2.94E-221 wgd
Cone20ag0535 Cone-Chr20:2934404 Cone6ag1543 Cone-Chr6:12118169 2.46E-189 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g465 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1315 . . Cone20ag0535 . . . . Blo17g00107 . . Bda13g01375 . Bpe14g00469 . Bma02g00125 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000367 5 3 5 4 4 4 5 4 4 4 4 4 6 5 4 4 4 5 5 4 4 4 4 6 6 3 4 3 6 2 129