Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0539 ATGGAATTTGACGAGGAACACGAAGAAGAACAAGAAGAGGAAATGGAGGAGGAGATGCAGACGCAGCATCAACTCGGTACTAACTCGGGTTCGGCCCGGCCCAGAATGGGACCCAATAGCGGCGAAGGTGGTTCGACGGTTAGAAAAAGTATGACCGGAACAACTACTACTCCTACTACTATCAGGTACAGAGAGTGCCTGAAGAACCACGCCATCAGCATAGGCGGACACGCCGTCGACGGTTGCGGCGAGTTCATTGCCTCCGGGGAAGACGGTACTCTCGACGCGCTCAAATGCGCCGCGTGTAACTGCCACCGGAATTTCCACCGCAAAGAAACCGATGCGCCAGATCAGATCGGTACTACTAATCACCACTCGCTCCAACCGTATCCCCACCACCACCCGAGCTTCGCCCCCCCGTACTACCGTGCACTGCCGCCTCCGTCAGGCTACCTCCACCTGAGCTCACCTCCAGGTCATCATCAGAGGCCGTTGGCGTTGCCTGCTGTGTCGGGAGGTAGAGACGAGGAAGGGATGTCGAATCCGAGCAGTAGCGGTGGGGGCGGTGGAGGATCGTCGAAGAAAAGGTTTAGGACAAAGTTCAGTCAGGAGCAGAAGGAGAAGATGTTAGCATTTGCAGAGACGGTTGGGTGGAGGATTCAGAAACACGACGAGGTCGCGGTGGAGCAGTTTTGCGCGGAGGCTGGTGTGAACCGCCATGTTTTGAAGGTCTGGATGCATAATAACAAGCACACTCTTGGTAAGAAACCTTAA 774 55.3 MEFDEEHEEEQEEEMEEEMQTQHQLGTNSGSARPRMGPNSGEGGSTVRKSMTGTTTTPTTIRYRECLKNHAISIGGHAVDGCGEFIASGEDGTLDALKCAACNCHRNFHRKETDAPDQIGTTNHHSLQPYPHHHPSFAPPYYRALPPPSGYLHLSSPPGHHQRPLALPAVSGGRDEEGMSNPSSSGGGGGGSSKKRFRTKFSQEQKEKMLAFAETVGWRIQKHDEVAVEQFCAEAGVNRHVLKVWMHNNKHTLGKKP 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2995418 2996294 + Conep20aG0055500.1 Cone20ag0539 460443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0539 257 Pfam ZF-HD protein dimerisation region 61 113 IPR006456 -
Cone20ag0539 257 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 22 252 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cone20ag0539 257 MobiDBLite consensus disorder prediction 152 200 - -
Cone20ag0539 257 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 112 IPR006456 -
Cone20ag0539 257 SUPERFAMILY Homeodomain-like 179 255 IPR009057 -
Cone20ag0539 257 Coils Coil 1 25 - -
Cone20ag0539 257 Gene3D - 178 254 - -
Cone20ag0539 257 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 62 112 IPR006456 -
Cone20ag0539 257 MobiDBLite consensus disorder prediction 1 17 - -
Cone20ag0539 257 MobiDBLite consensus disorder prediction 21 35 - -
Cone20ag0539 257 FunFam Zinc-finger homeodomain protein 2 180 255 - -
Cone20ag0539 257 MobiDBLite consensus disorder prediction 1 55 - -
Cone20ag0539 257 NCBIfam homeobox domain, ZF-HD class 194 250 IPR006455 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0849 Cone-Chr16:9062314 Cone20ag0539 Cone-Chr20:2995418 2.64E-39 dispersed
Cone17ag1347 Cone-Chr17:9437164 Cone20ag0539 Cone-Chr20:2995418 1.54E-50 dispersed
Cone20ag0136 Cone-Chr20:611376 Cone20ag0539 Cone-Chr20:2995418 9.57E-54 dispersed
Cone20ag0539 Cone-Chr20:2995418 Cone2ag0193 Cone-Chr2:1019885 9.47E-47 dispersed
Cone17ag1192 Cone-Chr17:8734833 Cone20ag0539 Cone-Chr20:2995418 1.69E-122 wgd
Cone20ag0539 Cone-Chr20:2995418 Cone6ag1541 Cone-Chr6:12098444 3.94E-74 wgd
Cone20ag0539 Cone-Chr20:2995418 Cone9ag1456 Cone-Chr9:10797334 1.50E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45602 PF00170 bZIP_1 1.10E-07 CL0018 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0539 - - - 0.0