Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0539 ATGGAATTTGACGAGGAACACGAAGAAGAACAAGAAGAGGAAATGGAGGAGGAGATGCAGACGCAGCATCAACTCGGTACTAACTCGGGTTCGGCCCGGCCCAGAATGGGACCCAATAGCGGCGAAGGTGGTTCGACGGTTAGAAAAAGTATGACCGGAACAACTACTACTCCTACTACTATCAGGTACAGAGAGTGCCTGAAGAACCACGCCATCAGCATAGGCGGACACGCCGTCGACGGTTGCGGCGAGTTCATTGCCTCCGGGGAAGACGGTACTCTCGACGCGCTCAAATGCGCCGCGTGTAACTGCCACCGGAATTTCCACCGCAAAGAAACCGATGCGCCAGATCAGATCGGTACTACTAATCACCACTCGCTCCAACCGTATCCCCACCACCACCCGAGCTTCGCCCCCCCGTACTACCGTGCACTGCCGCCTCCGTCAGGCTACCTCCACCTGAGCTCACCTCCAGGTCATCATCAGAGGCCGTTGGCGTTGCCTGCTGTGTCGGGAGGTAGAGACGAGGAAGGGATGTCGAATCCGAGCAGTAGCGGTGGGGGCGGTGGAGGATCGTCGAAGAAAAGGTTTAGGACAAAGTTCAGTCAGGAGCAGAAGGAGAAGATGTTAGCATTTGCAGAGACGGTTGGGTGGAGGATTCAGAAACACGACGAGGTCGCGGTGGAGCAGTTTTGCGCGGAGGCTGGTGTGAACCGCCATGTTTTGAAGGTCTGGATGCATAATAACAAGCACACTCTTGGTAAGAAACCTTAA 774 55.3 MEFDEEHEEEQEEEMEEEMQTQHQLGTNSGSARPRMGPNSGEGGSTVRKSMTGTTTTPTTIRYRECLKNHAISIGGHAVDGCGEFIASGEDGTLDALKCAACNCHRNFHRKETDAPDQIGTTNHHSLQPYPHHHPSFAPPYYRALPPPSGYLHLSSPPGHHQRPLALPAVSGGRDEEGMSNPSSSGGGGGGSSKKRFRTKFSQEQKEKMLAFAETVGWRIQKHDEVAVEQFCAEAGVNRHVLKVWMHNNKHTLGKKP 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2995418 2996294 + Conep20aG0055500.1 Cone20ag0539 460443

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0539 257 Pfam ZF-HD protein dimerisation region 61 113 IPR006456 -
Cone20ag0539 257 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 22 252 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cone20ag0539 257 MobiDBLite consensus disorder prediction 152 200 - -
Cone20ag0539 257 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 112 IPR006456 -
Cone20ag0539 257 SUPERFAMILY Homeodomain-like 179 255 IPR009057 -
Cone20ag0539 257 Coils Coil 1 25 - -
Cone20ag0539 257 Gene3D - 178 254 - -
Cone20ag0539 257 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 62 112 IPR006456 -
Cone20ag0539 257 MobiDBLite consensus disorder prediction 1 17 - -
Cone20ag0539 257 MobiDBLite consensus disorder prediction 21 35 - -
Cone20ag0539 257 FunFam Zinc-finger homeodomain protein 2 180 255 - -
Cone20ag0539 257 MobiDBLite consensus disorder prediction 1 55 - -
Cone20ag0539 257 NCBIfam homeobox domain, ZF-HD class 194 250 IPR006455 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0539 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0849 Cone-Chr16:9062314 Cone20ag0539 Cone-Chr20:2995418 2.64E-39 dispersed
Cone17ag1347 Cone-Chr17:9437164 Cone20ag0539 Cone-Chr20:2995418 1.54E-50 dispersed
Cone20ag0136 Cone-Chr20:611376 Cone20ag0539 Cone-Chr20:2995418 9.57E-54 dispersed
Cone20ag0539 Cone-Chr20:2995418 Cone2ag0193 Cone-Chr2:1019885 9.47E-47 dispersed
Cone17ag1192 Cone-Chr17:8734833 Cone20ag0539 Cone-Chr20:2995418 1.69E-122 wgd
Cone20ag0539 Cone-Chr20:2995418 Cone6ag1541 Cone-Chr6:12098444 3.94E-74 wgd
Cone20ag0539 Cone-Chr20:2995418 Cone9ag1456 Cone-Chr9:10797334 1.50E-61 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone17ag1192 . 61 261 ZF-HD Transcription Factor Family AT5G65410 51.7 5.4e-43 172.2
Cone20ag0539 . 61 253 ZF-HD Transcription Factor Family AT4G24660 61.7 1.9e-57 219.9
Cone17ag1192 . 41 257 ZF-HD Transcription Factor Family AT4G24660 53.0 4.1e-52 202.2
Cone4ag0542 . 1 266 ZF-HD Transcription Factor Family AT5G15210 51.5 9.0e-51 198.0
Cone7ag0516 . 1 251 ZF-HD Transcription Factor Family AT5G15210 52.8 2.6e-50 196.4
Cone4ag0542 . 22 268 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.7
Cone7ag0516 . 13 253 ZF-HD Transcription Factor Family AT3G28920 61.8 7.9e-59 224.9
Cone16ag0849 . 2 276 ZF-HD Transcription Factor Family AT3G28920 51.9 5.3e-47 185.7
Cone7ag0516 . 20 268 ZF-HD Transcription Factor Family AT5G39760 58.0 1.0e-51 201.4
Cone4ag0542 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.6 5.5e-50 195.7
Cone16ag0849 . 31 282 ZF-HD Transcription Factor Family AT5G39760 57.0 1.4e-45 181.0
Cone2ag0193 . 77 271 ZF-HD Transcription Factor Family AT1G69600 52.2 2.1e-51 199.9
Cone20ag0539 . 61 253 ZF-HD Transcription Factor Family AT4G24660 61.7 1.9e-57 219.9
Cone17ag1192 . 41 257 ZF-HD Transcription Factor Family AT4G24660 53.0 4.1e-52 202.2
Cone7ag0516 . 20 268 ZF-HD Transcription Factor Family AT5G39760 58.0 1.0e-51 201.4
Cone4ag0542 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.6 5.5e-50 195.7
Cone16ag0849 . 31 282 ZF-HD Transcription Factor Family AT5G39760 57.0 1.4e-45 181.0
Cone17ag1192 . 61 261 ZF-HD Transcription Factor Family AT5G65410 51.7 5.4e-43 172.2
Cone2ag0193 . 77 271 ZF-HD Transcription Factor Family AT1G69600 52.2 2.1e-51 199.9
Cone4ag0542 . 1 266 ZF-HD Transcription Factor Family AT5G15210 51.5 9.0e-51 198.0
Cone7ag0516 . 1 251 ZF-HD Transcription Factor Family AT5G15210 52.8 2.6e-50 196.4
Cone4ag0542 . 22 268 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.7
Cone7ag0516 . 13 253 ZF-HD Transcription Factor Family AT3G28920 61.8 7.9e-59 224.9
Cone16ag0849 . 2 276 ZF-HD Transcription Factor Family AT3G28920 51.9 5.3e-47 185.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45602 PF00170 bZIP_1 1.10E-07 CL0018 Cone TF