Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0545 ATGGCACCCAGCTTTGACTCTGCTGTGACGAGCCTCTTATGCGCAGAAGACGATACCGTTTTCGATGACAACAACGAATATGTGGGCAAAATGGAGTTTGATCATCATCACAGAAAGAATCGAATCCATGATCAAAACATAAACTTTGATCGCAAAGAAGCAGAAGGGTTGCTATTGATGAGTGAAGAGTGCTTAGGACTATTGTTTGAGAAGGAAGATCAGCATTTGCCTACTCTCGATTATTTGAAGAGGTTGAAAAGTGGGGATTTGGACTTTGCCGCTAGAAAAGATGCTCTTGATTGGATTTCTAAGGTCAATGCTCATTTCTGCTTCGGTCCTCTCTGCTCTTACTTAGCTGTAAACTACTTGGACCGCTTCCTTTCGGCTTATGAACTACCTAAGGGCAATGCTTGGACAATGCAACTACTGGCCGCAGCATGTTTATCACTTGCAGCCAAAATCGACGAAACGGAAGTCCCATTGTCCTTAGATTTACAGGTGGGTGGAGCGAAATTTGTTTTTGAAGCTAGAACAATACAAAGAATGGAGCTTTTAGTGTTAAGCACATTACGATGGAGAATGCAAGCGATCACTCCTTTCTCCTTCATAGACCATTTTCTTCGCATGATTTATGATAATGCTGATCAAAGTTTCTTTCTCCGGTCCATTCAACTAATTTTAAGGACGATTCAAAGTGTCGACTTTCTAGAATTCAAACCTTCCATTATCGCTGCTGCCATAGCCATATCAATTGTACAAGAAACTCAACCACTAGATATAGAGAAATCCATATCTCTTCTCATCCAACATAATGAAAAGGAGAGAGCAGTGAAGTGTATGAATTTGATCAAGGAGGTTGCATTGATTAGTGGGTCTATGAAGGATGGAAGAAGTAGAGGACTGGGTTTAAATTCTGTTCCAAGGAGTCCAAGTGGGATTTTGGACATAGGTGGGTGTATGAGCTATAGCAATACAAGTGATGCATATAATACGGTTGGATCATGTGCTGATTCTTCTCACTATAGGTCAGGAGTGAAGAGGAGAAGGCTAAATAGACCCTGTTGTGAAGTTTGA 1074 41.15 MAPSFDSAVTSLLCAEDDTVFDDNNEYVGKMEFDHHHRKNRIHDQNINFDRKEAEGLLLMSEECLGLLFEKEDQHLPTLDYLKRLKSGDLDFAARKDALDWISKVNAHFCFGPLCSYLAVNYLDRFLSAYELPKGNAWTMQLLAAACLSLAAKIDETEVPLSLDLQVGGAKFVFEARTIQRMELLVLSTLRWRMQAITPFSFIDHFLRMIYDNADQSFFLRSIQLILRTIQSVDFLEFKPSIIAAAIAISIVQETQPLDIEKSISLLIQHNEKERAVKCMNLIKEVALISGSMKDGRSRGLGLNSVPRSPSGILDIGGCMSYSNTSDAYNTVGSCADSSHYRSGVKRRRLNRPCCEV 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3036345 3038138 - Conep20aG0056100.1 Cone20ag0545 460449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0545 357 SUPERFAMILY Cyclin-like 60 194 IPR036915 -
Cone20ag0545 357 CDD CYCLIN_AtCycD-like_rpt1 94 192 - -
Cone20ag0545 357 FunFam D2/4-type cyclin 78 191 - -
Cone20ag0545 357 Pfam Cyclin, N-terminal domain 67 194 IPR006671 -
Cone20ag0545 357 Pfam Cyclin, C-terminal domain 197 287 IPR004367 -
Cone20ag0545 357 SMART cyclin_7 100 188 IPR013763 -
Cone20ag0545 357 CDD CYCLIN_AtCycD-like_rpt2 197 283 - -
Cone20ag0545 357 Gene3D - 78 195 - -
Cone20ag0545 357 Gene3D - 68 265 - -
Cone20ag0545 357 PANTHER CYCLINS 62 280 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone20ag0545 357 FunFam D6-type cyclin 192 281 - -
Cone20ag0545 357 SUPERFAMILY Cyclin-like 179 251 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0209 Cone-Chr20:896176 Cone20ag0545 Cone-Chr20:3036345 1.56E-47 dispersed
Cone20ag0545 Cone-Chr20:3036345 Cone3ag1037 Cone-Chr3:29188468 3.71E-47 dispersed
Cone17ag1189 Cone-Chr17:8708758 Cone20ag0545 Cone-Chr20:3036345 5.84E-218 wgd
Cone20ag0545 Cone-Chr20:3036345 Cone4ag1308 Cone-Chr4:10767744 1.90E-124 wgd
Cone20ag0545 Cone-Chr20:3036345 Cone6ag1538 Cone-Chr6:12087182 1.37E-85 wgd
Cone20ag0545 Cone-Chr20:3036345 Cone7ag0848 Cone-Chr7:6444069 4.40E-125 wgd
Cone20ag0545 Cone-Chr20:3036345 Cone9ag1454 Cone-Chr9:10785867 1.74E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0545 K18810 - cit:102630732 386.341