Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0548 ATGTACGGCCACGTCCAATCCCTCAATACCTCCGATCAAATCCCCTCCGGTGACGGAAAAAGCGGCGACTCCGCCGCCGCTGCCTGCCATGACTCTATCGACGGTAACGCTCTCATTGGTTACAATGCTCACGTCCTCGAAGACGGTGCCGGTGGAGTCGAAGATGTCGGTCATGACGCCATTTATGTCTCCGCCGACGGAGCTGGCTCTGACATTGTCTCCCAACGCAGCGACGGTACCAGCCAGCTGACGCTTTCTTTTCGCGGTCAAGTGTATGTTTTTGACGCCGTCACTCCTGACAAGGTTCAAGCTGTGTTACTTTTGTTGGGAGGATGCGAGATAACTCCAGGTCGGGAAGATCAGAACCAGAGGACACCTATGGAACTTCCCTTACGTTGTAGTCAGCCACAGAGAGCAGCCTCATTAAATAGGTTTCGCCAGAAGAGAAAAGAGCGTTGCTTTGATAAGAAAGTTCGATATAGCGTTCGGCAAGAAGTTGCTCTCAGGATGCAGCGTAACAAGGGACAATTTACTTCTGCTAAGAAGCCTGATGGGACATATGGATGGAAGAACGTCCAGGAGGCAGGTCAGGATGATACCCCACCGGAAACCTTATGCACTCATTGTGGCACAAGTTCAAAAGCTACACCAATGATGCGACGGGGACCATCTGGTCCAAGATCCCTTTGTAATGCTTGTGGGCTCTTCTGGGCAAACAGGGGAACATTAAGAGATCTTTCAAAGAGAAATCAGGACAATACTGTGACCCAATCTGAGCAGACTGGAGGTGATGCTAACGATTCAGGCTGCAGAACAGCCATCCATAGCCGCAGCCAAATCAAAACTTTCTCTAATGGTGATAACTCAACTTTGATGGCTGAGCATTAA 888 50.11 MYGHVQSLNTSDQIPSGDGKSGDSAAAACHDSIDGNALIGYNAHVLEDGAGGVEDVGHDAIYVSADGAGSDIVSQRSDGTSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGCEITPGREDQNQRTPMELPLRCSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKPDGTYGWKNVQEAGQDDTPPETLCTHCGTSSKATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQDNTVTQSEQTGGDANDSGCRTAIHSRSQIKTFSNGDNSTLMAEH 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3052702 3055695 - Conep20aG0056400.1 Cone20ag0548 460452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0548 295 MobiDBLite consensus disorder prediction 1 26 - -
Cone20ag0548 295 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 251 - -
Cone20ag0548 295 Pfam tify domain 78 110 IPR010399 -
Cone20ag0548 295 ProSiteProfiles GATA-type zinc finger domain profile. 200 259 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0548 295 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515(InterPro)
Cone20ag0548 295 PANTHER GATA TRANSCRIPTION FACTOR 28 53 288 IPR045280 GO:0006355(InterPro)
Cone20ag0548 295 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0548 295 MobiDBLite consensus disorder prediction 248 271 - -
Cone20ag0548 295 Pfam CCT motif 138 180 IPR010402 GO:0005515(InterPro)
Cone20ag0548 295 Gene3D - 197 260 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cone20ag0548 295 CDD ZnF_GATA 206 253 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0548 295 ProSiteProfiles Tify domain profile. 76 111 IPR010399 -
Cone20ag0548 295 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0548 295 SMART tify_2 76 111 IPR010399 -
Cone20ag0548 295 MobiDBLite consensus disorder prediction 1 18 - -
Cone20ag0548 295 SMART GATA_3 200 253 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0548 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1184 Cone-Chr17:8674989 Cone20ag0548 Cone-Chr20:3052702 4.75E-62 dispersed
Cone20ag0548 Cone-Chr20:3052702 Cone3ag1079 Cone-Chr3:29455861 3.20E-66 dispersed
Cone17ag1183 Cone-Chr17:8671190 Cone20ag0548 Cone-Chr20:3052702 1.09E-195 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone17ag1184 . 28 247 Tify Gene Family AT1G51600 50.4 6.9e-52 201.8
Cone3ag1079 . 76 250 Tify Gene Family AT1G51600 63.0 1.3e-50 197.6
Cone17ag1183 . 68 245 Tify Gene Family AT1G51600 56.2 1.0e-47 188.0
Cone20ag0548 . 71 248 Tify Gene Family AT1G51600 56.2 1.4e-47 187.6
Cone17ag1184 . 28 247 Tify Gene Family AT1G51600 50.4 6.9e-52 201.8
Cone3ag1079 . 76 250 Tify Gene Family AT1G51600 63.0 1.3e-50 197.6
Cone17ag1183 . 68 245 Tify Gene Family AT1G51600 56.2 1.0e-47 188.0
Cone20ag0548 . 71 248 Tify Gene Family AT1G51600 56.2 1.4e-47 187.6
Cone15ag0833 . 1 181 Tify Gene Family AT4G14713 53.9 7.1e-46 181.4
Cone14ag0872 . 1 190 Tify Gene Family AT4G14713 51.8 2.3e-44 176.4
Cone15ag0833 . 1 287 Tify Gene Family AT4G14720 51.0 1.7e-64 243.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012239 2 1 2 0 2 0 0 1 1 0 0 0 1 1 1 1 1 2 0 1 1 0 1 0 0 1 1 5 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45603 PF08718 GLTP 4.30E-21 No_clan Cone TF