Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0548 ATGTACGGCCACGTCCAATCCCTCAATACCTCCGATCAAATCCCCTCCGGTGACGGAAAAAGCGGCGACTCCGCCGCCGCTGCCTGCCATGACTCTATCGACGGTAACGCTCTCATTGGTTACAATGCTCACGTCCTCGAAGACGGTGCCGGTGGAGTCGAAGATGTCGGTCATGACGCCATTTATGTCTCCGCCGACGGAGCTGGCTCTGACATTGTCTCCCAACGCAGCGACGGTACCAGCCAGCTGACGCTTTCTTTTCGCGGTCAAGTGTATGTTTTTGACGCCGTCACTCCTGACAAGGTTCAAGCTGTGTTACTTTTGTTGGGAGGATGCGAGATAACTCCAGGTCGGGAAGATCAGAACCAGAGGACACCTATGGAACTTCCCTTACGTTGTAGTCAGCCACAGAGAGCAGCCTCATTAAATAGGTTTCGCCAGAAGAGAAAAGAGCGTTGCTTTGATAAGAAAGTTCGATATAGCGTTCGGCAAGAAGTTGCTCTCAGGATGCAGCGTAACAAGGGACAATTTACTTCTGCTAAGAAGCCTGATGGGACATATGGATGGAAGAACGTCCAGGAGGCAGGTCAGGATGATACCCCACCGGAAACCTTATGCACTCATTGTGGCACAAGTTCAAAAGCTACACCAATGATGCGACGGGGACCATCTGGTCCAAGATCCCTTTGTAATGCTTGTGGGCTCTTCTGGGCAAACAGGGGAACATTAAGAGATCTTTCAAAGAGAAATCAGGACAATACTGTGACCCAATCTGAGCAGACTGGAGGTGATGCTAACGATTCAGGCTGCAGAACAGCCATCCATAGCCGCAGCCAAATCAAAACTTTCTCTAATGGTGATAACTCAACTTTGATGGCTGAGCATTAA 888 50.11 MYGHVQSLNTSDQIPSGDGKSGDSAAAACHDSIDGNALIGYNAHVLEDGAGGVEDVGHDAIYVSADGAGSDIVSQRSDGTSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGCEITPGREDQNQRTPMELPLRCSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKPDGTYGWKNVQEAGQDDTPPETLCTHCGTSSKATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQDNTVTQSEQTGGDANDSGCRTAIHSRSQIKTFSNGDNSTLMAEH 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3052702 3055695 - Conep20aG0056400.1 Cone20ag0548 460452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0548 295 MobiDBLite consensus disorder prediction 1 26 - -
Cone20ag0548 295 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 251 - -
Cone20ag0548 295 Pfam tify domain 78 110 IPR010399 -
Cone20ag0548 295 ProSiteProfiles GATA-type zinc finger domain profile. 200 259 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0548 295 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515(InterPro)
Cone20ag0548 295 PANTHER GATA TRANSCRIPTION FACTOR 28 53 288 IPR045280 GO:0006355(InterPro)
Cone20ag0548 295 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0548 295 MobiDBLite consensus disorder prediction 248 271 - -
Cone20ag0548 295 Pfam CCT motif 138 180 IPR010402 GO:0005515(InterPro)
Cone20ag0548 295 Gene3D - 197 260 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cone20ag0548 295 CDD ZnF_GATA 206 253 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0548 295 ProSiteProfiles Tify domain profile. 76 111 IPR010399 -
Cone20ag0548 295 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0548 295 SMART tify_2 76 111 IPR010399 -
Cone20ag0548 295 MobiDBLite consensus disorder prediction 1 18 - -
Cone20ag0548 295 SMART GATA_3 200 253 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1184 Cone-Chr17:8674989 Cone20ag0548 Cone-Chr20:3052702 4.75E-62 dispersed
Cone20ag0548 Cone-Chr20:3052702 Cone3ag1079 Cone-Chr3:29455861 3.20E-66 dispersed
Cone17ag1183 Cone-Chr17:8671190 Cone20ag0548 Cone-Chr20:3052702 1.09E-195 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45603 PF08718 GLTP 4.30E-21 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0548 - - - 0.0