Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0555 ATGGCGAGGGTGAAGATAAAGAAGATTGATAACGTGACAGCAAGACAAGTGACCTTCTCTAAGAGAAGACGAGGCCTCTTCAAGAAAGCTCAAGAGCTGTCTGTTCTTTGTGATGCTCAAGTTGCTGTCATCATCTTCTCTGCTACCAGAAAGCTCTTCCAGTTTTCCAGCTCAAGTATGGATGATGTACTCTCAAGGTACCATTTGCACTCTAGTAACCTCCTCCTTAAAGAGCGAGACCAGCCCTCCCTTGAGTTAGAGCTAGAGAAGAGCAATAACTCCAGACTGCTTGAGGAATTTGAAGAGACGAGCCACCAACTGAGGCAGATGAAGGGCGAGGATCTTCAAGGGTTAGGTATAGAGGAGTTGCAGAATCTGGAGAAAATGCTTGAAGCCGGTCTCGGCCGTGTGCTTCAGACTAAGGAGGAACGGGTTATGAGTGAGATCACTGCACTTGAAGCTAAGGGAGCTGAGTTGATAGAAGACAACAAGAAACTAAAAGAGAAGATGAAGATGATCGTGTCGTCGAATGGAAAAGGAAAAGCAAAACTAGATCGTCACTATATGAATAACAACATGGAATCCGACATCGCGTGGATCCAACATGAAGCTGAAGCAATGTCCTCAGATCAATCCATTACCAATATCTGCAGCTGCAACAGTGGCCCTTCTCTTGAAGATGACTCTTCTGATACCTCTCGCAGATTAGCGCTTACGTTATTCAGATAA 729 45.13 MARVKIKKIDNVTARQVTFSKRRRGLFKKAQELSVLCDAQVAVIIFSATRKLFQFSSSSMDDVLSRYHLHSSNLLLKERDQPSLELELEKSNNSRLLEEFEETSHQLRQMKGEDLQGLGIEELQNLEKMLEAGLGRVLQTKEERVMSEITALEAKGAELIEDNKKLKEKMKMIVSSNGKGKAKLDRHYMNNNMESDIAWIQHEAEAMSSDQSITNICSCNSGPSLEDDSSDTSRRLALTLFR 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3087265 3091869 - Conep20aG0057100.1 Cone20ag0555 460459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0555 242 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone20ag0555 242 FunFam Transcription factor, MADS-box 11 83 - -
Cone20ag0555 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 201 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone20ag0555 242 Gene3D - 11 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone20ag0555 242 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone20ag0555 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 8 55 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone20ag0555 242 Pfam K-box region 89 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone20ag0555 242 Coils Coil 149 169 - -
Cone20ag0555 242 Coils Coil 93 113 - -
Cone20ag0555 242 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone20ag0555 242 PRINTS MADS domain signature 36 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone20ag0555 242 PRINTS MADS domain signature 1 21 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone20ag0555 242 PRINTS MADS domain signature 21 36 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone20ag0555 242 SMART madsneu2 1 58 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone20ag0555 242 ProSiteProfiles MADS-box domain profile. 1 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0555 Cone-Chr20:3087265 Cone6ag1530 Cone-Chr6:12035959 4.56E-56 dispersed
Cone20ag0555 Cone-Chr20:3087265 Cone20ag0564 Cone-Chr20:3151511 3.29E-29 proximal
Cone17ag1176 Cone-Chr17:8627228 Cone20ag0555 Cone-Chr20:3087265 1.43E-124 wgd
Cone20ag0555 Cone-Chr20:3087265 Cone4ag1298 Cone-Chr4:10714434 1.25E-76 wgd
Cone20ag0555 Cone-Chr20:3087265 Cone7ag0856 Cone-Chr7:6546748 3.10E-74 wgd
Cone20ag0555 Cone-Chr20:3087265 Cone9ag1445 Cone-Chr9:10720623 6.10E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45604 PF00995 Sec1 6.20E-122 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0555 - - - 0.0