Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0558 ATGTTCTCGAAGCTTCAACAACAGCAGCAGCAGCAGCAAGTTCAAGCCCACCATCACAGCCCAAGCCCGCTCCAGACCCACCCGTTTACCCATCCATTCCAAGTCAACCCGACCAGAGAATGCCAAACCTCCGAGGACGACAACACCGGCCGCAGCAATGGACCCCCGAACATCACGGCCCAAAAACAGCCCAAGCTCGAACAACAACAACACGATCGCCATTCTGGCGACGGAGCGTCCGTCGAAGTGGTCCGTCGCCCAAGAGGCCGTCCGCCGGGCTCCAAAAACCGCCCCAAACCACCCGTTATTATAACCGGAGACACCGAGCCTGCAATGAGCCCATACATTCTAGAAGTCCCTGGAGGAAACGACGTGGTTGAAGCCATCGCGCGCTTTTGCCGTCGCAAAAATATCGGCCTATGTGTCCTCACCGGATACGGAACCGTCGGAAATGTTACCCTCCGACAACCGTCCACGAATCCTGGAGCGACGGTCACCTTCCACGGCCGTTTCGACATACTATCCATTTGCGCTACCTTCATCCCCCACACGACATCCTATCCCGTCCCTAACGGCTTCACTATCTCACTCGCCGGACCACAAGGCCAGATCGTCGGAGGTTTAGTCTCCGGCGCGTTGATCGCAGTCGGAACGGTCTTCGTTATCGCCGCATCGTTCAATAATCCTATGTATCATCGTTTATCAGCTGACGACGAGGTTAGAAATTCAGTTTCTGGTAGCGGCGGCGGTGGTGGAGGTGCAGGTGAGGCTCAGTCCCCGCCGGATTCCGGAGGCGGAGAGAGTGGAGGACATGGTCCGTCTCACGAGTCGGGTGGAATACCAATGTATAGCTGCCACATGTCGTCCGATGTCATCTGGGCTCCCACAGCAAGACATCAGCCACCACCTCCCCCTCCGTATTAA 924 56.82 MFSKLQQQQQQQQVQAHHHSPSPLQTHPFTHPFQVNPTRECQTSEDDNTGRSNGPPNITAQKQPKLEQQQHDRHSGDGASVEVVRRPRGRPPGSKNRPKPPVIITGDTEPAMSPYILEVPGGNDVVEAIARFCRRKNIGLCVLTGYGTVGNVTLRQPSTNPGATVTFHGRFDILSICATFIPHTTSYPVPNGFTISLAGPQGQIVGGLVSGALIAVGTVFVIAASFNNPMYHRLSADDEVRNSVSGSGGGGGGAGEAQSPPDSGGGESGGHGPSHESGGIPMYSCHMSSDVIWAPTARHQPPPPPPY 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3120524 3121517 + Conep20aG0057400.1 Cone20ag0558 460462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0558 307 ProSiteProfiles PPC domain profile profile. 109 247 IPR005175 -
Cone20ag0558 307 MobiDBLite consensus disorder prediction 66 84 - -
Cone20ag0558 307 MobiDBLite consensus disorder prediction 1 65 - -
Cone20ag0558 307 MobiDBLite consensus disorder prediction 1 107 - -
Cone20ag0558 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 49 274 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone20ag0558 307 CDD DUF296 114 226 IPR005175 -
Cone20ag0558 307 Gene3D - 113 244 - -
Cone20ag0558 307 FunFam AT-hook motif nuclear-localized protein 113 245 - -
Cone20ag0558 307 MobiDBLite consensus disorder prediction 241 283 - -
Cone20ag0558 307 SUPERFAMILY AF0104/ALDC/Ptd012-like 111 236 - -
Cone20ag0558 307 Pfam Plants and Prokaryotes Conserved (PCC) domain 114 227 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0558 Cone-Chr20:3120524 Cone4ag1300 Cone-Chr4:10726530 4.00E-89 dispersed
Cone17ag1172 Cone-Chr17:8610336 Cone20ag0558 Cone-Chr20:3120524 7.97E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0558 - - - 0.0