Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone20ag0558 | ATGTTCTCGAAGCTTCAACAACAGCAGCAGCAGCAGCAAGTTCAAGCCCACCATCACAGCCCAAGCCCGCTCCAGACCCACCCGTTTACCCATCCATTCCAAGTCAACCCGACCAGAGAATGCCAAACCTCCGAGGACGACAACACCGGCCGCAGCAATGGACCCCCGAACATCACGGCCCAAAAACAGCCCAAGCTCGAACAACAACAACACGATCGCCATTCTGGCGACGGAGCGTCCGTCGAAGTGGTCCGTCGCCCAAGAGGCCGTCCGCCGGGCTCCAAAAACCGCCCCAAACCACCCGTTATTATAACCGGAGACACCGAGCCTGCAATGAGCCCATACATTCTAGAAGTCCCTGGAGGAAACGACGTGGTTGAAGCCATCGCGCGCTTTTGCCGTCGCAAAAATATCGGCCTATGTGTCCTCACCGGATACGGAACCGTCGGAAATGTTACCCTCCGACAACCGTCCACGAATCCTGGAGCGACGGTCACCTTCCACGGCCGTTTCGACATACTATCCATTTGCGCTACCTTCATCCCCCACACGACATCCTATCCCGTCCCTAACGGCTTCACTATCTCACTCGCCGGACCACAAGGCCAGATCGTCGGAGGTTTAGTCTCCGGCGCGTTGATCGCAGTCGGAACGGTCTTCGTTATCGCCGCATCGTTCAATAATCCTATGTATCATCGTTTATCAGCTGACGACGAGGTTAGAAATTCAGTTTCTGGTAGCGGCGGCGGTGGTGGAGGTGCAGGTGAGGCTCAGTCCCCGCCGGATTCCGGAGGCGGAGAGAGTGGAGGACATGGTCCGTCTCACGAGTCGGGTGGAATACCAATGTATAGCTGCCACATGTCGTCCGATGTCATCTGGGCTCCCACAGCAAGACATCAGCCACCACCTCCCCCTCCGTATTAA | 924 | 56.82 | MFSKLQQQQQQQQVQAHHHSPSPLQTHPFTHPFQVNPTRECQTSEDDNTGRSNGPPNITAQKQPKLEQQQHDRHSGDGASVEVVRRPRGRPPGSKNRPKPPVIITGDTEPAMSPYILEVPGGNDVVEAIARFCRRKNIGLCVLTGYGTVGNVTLRQPSTNPGATVTFHGRFDILSICATFIPHTTSYPVPNGFTISLAGPQGQIVGGLVSGALIAVGTVFVIAASFNNPMYHRLSADDEVRNSVSGSGGGGGGAGEAQSPPDSGGGESGGHGPSHESGGIPMYSCHMSSDVIWAPTARHQPPPPPPY | 307 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 3120524 | 3121517 | + | Conep20aG0057400.1 | Cone20ag0558 | 460462 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone20ag0558 | 307 | ProSiteProfiles | PPC domain profile profile. | 109 | 247 | IPR005175 | - | |
Cone20ag0558 | 307 | MobiDBLite | consensus disorder prediction | 66 | 84 | - | - | |
Cone20ag0558 | 307 | MobiDBLite | consensus disorder prediction | 1 | 65 | - | - | |
Cone20ag0558 | 307 | MobiDBLite | consensus disorder prediction | 1 | 107 | - | - | |
Cone20ag0558 | 307 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 49 | 274 | IPR014476 | GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cone20ag0558 | 307 | CDD | DUF296 | 114 | 226 | IPR005175 | - | |
Cone20ag0558 | 307 | Gene3D | - | 113 | 244 | - | - | |
Cone20ag0558 | 307 | FunFam | AT-hook motif nuclear-localized protein | 113 | 245 | - | - | |
Cone20ag0558 | 307 | MobiDBLite | consensus disorder prediction | 241 | 283 | - | - | |
Cone20ag0558 | 307 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 111 | 236 | - | - | |
Cone20ag0558 | 307 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 114 | 227 | IPR005175 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone20ag0558 | Cone-Chr20:3120524 | Cone4ag1300 | Cone-Chr4:10726530 | 4.00E-89 | dispersed | |
Cone17ag1172 | Cone-Chr17:8610336 | Cone20ag0558 | Cone-Chr20:3120524 | 7.97E-174 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone20ag0558 | - | - | - | 0.0 |