Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0564 ATGGGGAGGGGAAAGATCGCGATAAGAAGGATCGACGATATGGCGAGCAGGCAGGTGACGTTCTCGAAGAGGAGGAGCGGGCTGTTGAAGAAGGCGAAGGAGCTAGGGATCCTGTGCGACGCGGAGGTAGGAGTTGTGATCTTCTCCAGCACGGACAAGCTATACGATTACGCCAGCTCCAGCATGAAAGCAGTAATTGACCGGTACATGAAAAGAAAAGAAGAGGATCATCAACTTAGTAGCCCAACTTCTGAAGTTAAGTTCTGGCAGAGAGAAGCAGCCATGTTGCAGGCGCAACTACAGAACTTGCAAGAGAATCACCGGAAAATGATGGGGGAGGAGCTTTCTAGTTTGAGTATCAAAGACTTGCAGAGTCTGGAGAACCAATTGGAAATGAGTCTTCGGGGTGTCCGTAAGACAAAGGATCAAATCCTAATGGACGAAATCAAACATCTAAGTGAGAAGGGGAGAATAATTCACCAAGAAAATTTGGAACTTTATACAAAGATAAATTTTGCATCCAAGGCCTATGAGACAAGAGATGTAAATGGAGCAAACAAACAACTGCTGCTTAATGATGGCCTAGCCTCTGTAGATGACTCAGATGTACCTATAAATCTCCAGCTCTGTCAACCAAGGCATCAAGATCTCAAGGCAACAGCAAAGGATACAAAGTTAGGGTATAGAGTCTATATGTGCAGACTACAGCTATAG 714 45.24 MGRGKIAIRRIDDMASRQVTFSKRRSGLLKKAKELGILCDAEVGVVIFSSTDKLYDYASSSMKAVIDRYMKRKEEDHQLSSPTSEVKFWQREAAMLQAQLQNLQENHRKMMGEELSSLSIKDLQSLENQLEMSLRGVRKTKDQILMDEIKHLSEKGRIIHQENLELYTKINFASKAYETRDVNGANKQLLLNDGLASVDDSDVPINLQLCQPRHQDLKATAKDTKLGYRVYMCRLQL 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3151511 3165734 + Conep20aG0058000.1 Cone20ag0564 460468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0564 237 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone20ag0564 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone20ag0564 237 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone20ag0564 237 Coils Coil 123 143 - -
Cone20ag0564 237 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone20ag0564 237 Gene3D - 13 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone20ag0564 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone20ag0564 237 Coils Coil 86 113 - -
Cone20ag0564 237 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone20ag0564 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone20ag0564 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone20ag0564 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone20ag0564 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 188 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone20ag0564 237 Pfam K-box region 81 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1146 Cone-Chr18:8262260 Cone20ag0564 Cone-Chr20:3151511 3.55E-10 dispersed
Cone20ag0564 Cone-Chr20:3151511 Cone6ag0933 Cone-Chr6:4798470 7.17E-41 dispersed
Cone20ag0555 Cone-Chr20:3087265 Cone20ag0564 Cone-Chr20:3151511 3.29E-29 proximal
Cone20ag0564 Cone-Chr20:3151511 Cone4ag1281 Cone-Chr4:10526697 2.76E-80 wgd
Cone20ag0564 Cone-Chr20:3151511 Cone7ag0871 Cone-Chr7:6703827 7.76E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45606 PF00107 ADH_zinc_N 6.30E-26 CL0063 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0564 K09264 - cit:102630220 301.982