Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0568 ATGAAAAAGATGGTGGTGAGGAAAGTAGGGAAGTATGAGATAGGGAGGACGATCGGAGAAGGTACTTTCGCTAAGGTAAAGTTCGCTCAGAATACAGAGAGCGGCGAGAGTGTCGCCATGAAAATTCTCGATCGAAGCACCATAATCAAGCACAAGATGGTTGATCAGATAAAGAGGGAGATATCTATTATGAAGCTTGTGAGACATCCTTATGTCGTTCGTCTTCATGAGGTTCTGGCAAATCGTACTAAGATTTTTATAATCTTGGAGTTCATTACAGGTGGTGAATTGTTCGACAAAATAGTTCGTCATGGACGTCTTAGTGAAGCGGAGTCCAGAAGATACTTTCAACAGCTTATTGATGGTGTAGATTATTGCCATAGCAAGGGAGTTTATCACAGAGATTTAAAGCCTGAGAATCTTCTACTTGATTCCCAAGGTAATCTGAAGATTTCAGATTTTGGTCTAAGTGCATTGCCTGAACCTGGAGTAAGCCTCCTCCGGACAACATGTGGGACTCCAAACTATGTAGCACCAGAGGTACTCAGTCACAAGGGTTATAATGGTGCTGTGGCAGATGTTTGGTCCTGTGGTGTAATCCTTTATGTACTAATGGCAGGTTATCTTCCATTTGAGGATCTTGATCTCACCACGCTCTACAGTAAGATTGAGAAAGCTGATTTTTCATGTCCATCTTGGTTTCCTGTGGGAGCAAAATCCTTAATTCATAGAATCTTAGACCCAAAGCCTGAAACTCGTATTACCATTCAGGAGATTAGAGATGACGAGTGGTTTAAGAAGAGTTATGTTCCCCCTAGACTACTTGTATATGAAGATGTAAACCTGGACGATGTAAATGCTGTTTTTGATGACCCTGAGAGGTTTGACGAACAATGTGGGAGTGAGAAAACAGGCCCTCTGACATTGAATGCATTTGACCTGATAATTTTATCTCAAGGCTTAAACCTTGCAACAATGTTCGATCGTGGCAAGGACTCGACCAAATATCAGACACGATTTGTCTCCCAGAAACCCGCAAAGGTTGTCTTATCAAGCATGGAAGTTGTTGCACAGTCTATGGGTTTTAAGACTCACATTCGCAATTATAAGATGAGAGTGGAAGGCTTATCAGCAAATAAAACGTCACATTTTTCAGTTATTCTTCAAATTTTCAATGTTGCTCCCACATTTTTCATGGTGGATATTCAGAAATCATCTGGAGATGCTAGTGAGTTCCTCAAGTTTTATAAGAACTTTTGTAACAATCTTGAGGACATTATATGGCAACCTTCGAATGATTCAAGCAAAACAAAGGCAATCAAGACTAAGAATAAAAGGCGGTGA 1344 40.55 MKKMVVRKVGKYEIGRTIGEGTFAKVKFAQNTESGESVAMKILDRSTIIKHKMVDQIKREISIMKLVRHPYVVRLHEVLANRTKIFIILEFITGGELFDKIVRHGRLSEAESRRYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSQGNLKISDFGLSALPEPGVSLLRTTCGTPNYVAPEVLSHKGYNGAVADVWSCGVILYVLMAGYLPFEDLDLTTLYSKIEKADFSCPSWFPVGAKSLIHRILDPKPETRITIQEIRDDEWFKKSYVPPRLLVYEDVNLDDVNAVFDDPERFDEQCGSEKTGPLTLNAFDLIILSQGLNLATMFDRGKDSTKYQTRFVSQKPAKVVLSSMEVVAQSMGFKTHIRNYKMRVEGLSANKTSHFSVILQIFNVAPTFFMVDIQKSSGDASEFLKFYKNFCNNLEDIIWQPSNDSSKTKAIKTKNKRR 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3230502 3234635 - Conep20aG0058400.1 Cone20ag0568 460472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0568 447 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 413 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone20ag0568 447 Pfam NAF domain 306 364 IPR004041 GO:0007165(InterPro)
Cone20ag0568 447 FunFam Non-specific serine/threonine protein kinase 5 304 - -
Cone20ag0568 447 SUPERFAMILY Protein kinase-like (PK-like) 9 307 IPR011009 -
Cone20ag0568 447 CDD CIPK_C 310 420 - -
Cone20ag0568 447 FunFam Non-specific serine/threonine protein kinase 303 429 - -
Cone20ag0568 447 SMART serkin_6 12 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0568 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0568 447 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Cone20ag0568 447 ProSitePatterns Protein kinases ATP-binding region signature. 18 50 IPR017441 GO:0005524(InterPro)
Cone20ag0568 447 ProSiteProfiles Protein kinase domain profile. 12 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0568 447 Pfam Protein kinase domain 12 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0568 447 ProSiteProfiles NAF domain profile. 304 328 IPR018451 GO:0007165(InterPro)
Cone20ag0568 447 Gene3D Kinase associated domain 1, KA1 303 429 - -
Cone20ag0568 447 Gene3D Transferase(Phosphotransferase) domain 1 3 299 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0568 Cone-Chr20:3230502 Cone4ag0668 Cone-Chr4:3296691 9.56E-209 dispersed
Cone4ag1252 Cone-Chr4:10357419 Cone20ag0568 Cone-Chr20:3230502 4.17E-37 dispersed
Cone17ag1162 Cone-Chr17:8567212 Cone20ag0568 Cone-Chr20:3230502 9.14e-314 wgd
Cone20ag0568 Cone-Chr20:3230502 Cone7ag1230 Cone-Chr7:9124954 2.35E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82546 PF00085 Thioredoxin 1.40E-14 CL0172 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0568 - - - 0.0