Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0570 ATGGAAGAGAATGAAAGTAGCTTCTTACAGGAACTACTAGCTCAAACAAATGAATTCTTCTCAAATGGTTGGACCAGCAGTAATGCTACTACACCAACTACTACTACTACTACAAGTCTTGATGATTGCTTTGATCAATATAATCAAATCACTAGCAATTACTTTATTCCAAACTCTTCCACTTCTAATTCAGAAGAATTGCTATTTCCACCACACCTTAACCTCACCAACATTGATGAAGAAGCACTCTTTGATCCCTTTGTTGTTGCTGATGATCCACCACCCCATTTGGGCCTGCAAGAAGATTTCCGCCCCATTTCCAACATCGACGAAGATGAAGACGAAAAAGAAGGGGAGAAGGAAGAAAAAGTGGGCCCTGTTAACTTCCCAGGTGATGATCATCAGATTCGTAACACAGAGTACTCCGTTTTTTATCATCAAATTCAAGTTCAATCAACCAAGAAGGATGTTATACCAATTTTCAGAATGGGCTCGAATATAGAGAGAAGGAAGAATGTCATTATGCCTAAGAAAAAGATCGTGGGCCAGCCCTCCAAGAATCTAATGGCTGAGAGGAGGAGGAGAAAAAGATTGAATGATAGACTCGCCATGCTTAGATCCATTGTTCCTAAGATAAGCAAGATGGATAGAACCGCTATACTTGGAGATGCTATAGATTATACGAAAGAGCTTCTAGAGAAAGTGGCCAAACTACAAAAAGAAATTGATGAAATGGGCACTAAAGATAATGACCCGTTTAACACGCTAAGCATTTTCGAGGACATAGAGCCGAACCAACTGATAGTAAGAAACCCACCAAAGTTCGATGTCGAAAGGAGACCGAACGGCGAAACGAGTATCGAGATTTTGTGCAATGTGAAGCCCGGGTTATTGTTATCGACGGTGAATGGTTTAGAAGAATTAGGGCTTGAGATTCAACAATGTGTCATTAGCTGCTTTAGTAATGACTTTTCAATGCGAGCTTCTTGTAATTCTCATGAGGATATGAAGAAGCAAGGAATGGTAGCAGGCGGTGAAGACATAAAGGAAGCATTATTTAGAAGTGCGGGATATGGAGGAATGTTCTAG 1089 40.4 MEENESSFLQELLAQTNEFFSNGWTSSNATTPTTTTTTSLDDCFDQYNQITSNYFIPNSSTSNSEELLFPPHLNLTNIDEEALFDPFVVADDPPPHLGLQEDFRPISNIDEDEDEKEGEKEEKVGPVNFPGDDHQIRNTEYSVFYHQIQVQSTKKDVIPIFRMGSNIERRKNVIMPKKKIVGQPSKNLMAERRRRKRLNDRLAMLRSIVPKISKMDRTAILGDAIDYTKELLEKVAKLQKEIDEMGTKDNDPFNTLSIFEDIEPNQLIVRNPPKFDVERRPNGETSIEILCNVKPGLLLSTVNGLEELGLEIQQCVISCFSNDFSMRASCNSHEDMKKQGMVAGGEDIKEALFRSAGYGGMF 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3250453 3251993 + Conep20aG0058700.1 Cone20ag0570 460474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0570 362 Pfam Helix-loop-helix DNA-binding domain 189 231 IPR011598 GO:0046983(InterPro)
Cone20ag0570 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 186 248 IPR036638 GO:0046983(InterPro)
Cone20ag0570 362 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 141 358 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone20ag0570 362 MobiDBLite consensus disorder prediction 97 132 - -
Cone20ag0570 362 Coils Coil 228 248 - -
Cone20ag0570 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 231 IPR011598 GO:0046983(InterPro)
Cone20ag0570 362 Gene3D - 182 248 IPR036638 GO:0046983(InterPro)
Cone20ag0570 362 SMART finulus 188 237 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0570 Cone-Chr20:3250453 Cone2ag0011 Cone-Chr2:91010 5.76E-28 dispersed
Cone17ag1159 Cone-Chr17:8553316 Cone20ag0570 Cone-Chr20:3250453 3.53E-188 wgd
Cone20ag0570 Cone-Chr20:3250453 Cone4ag1276 Cone-Chr4:10485093 1.32E-72 wgd
Cone20ag0570 Cone-Chr20:3250453 Cone7ag0875 Cone-Chr7:6768236 3.92E-68 wgd
Cone20ag0570 Cone-Chr20:3250453 Cone9ag1430 Cone-Chr9:10624747 3.65E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45607 PF00071 Ras 1.30E-56 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0570 - - - 0.0