Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0572 ATGGGGACTGGTTGGAGAAGAGCCTTTTGCCACACGATCCCTAGGGATCCCCAGTCCAGATTTTCAGACAATCCACAGAGCAAAAGTGCAAGCCCAAGCCCAAGAAGTTGCGTCCGATTGAGGTTCCTCTCCGGAAGTATCAGCAATCCTTCCACACCTCGCCTGCAATCCAATCACCAGCCTGTTTCGGGCCCTAGCTTGCGCTGCAGAACGACAGAAGAAATTACTACTCCTAAGACGACACCGTCGCCTACTGCTGAATGTGAAACCGCTACTCCTAAGCTCACGAAAAGCCAGAAGCCACTGCGCGCCACCTCGAATCCGTCTTCTCCACGCTCTCCTCTGAAACTCTCTCTCTTCAAAAACAGCTTCAAATTCAGGAGTAGCTGCGGAATCTGTTTGAACAGCGTGAAAACAGGGCAGGGAACAGCCATTTACACTGCAGAGTGTGCTCACGCGTTTCACTTCTCGTGCATTGCGGATCACATTCGGAAGCATAACCGCCTGAGTTGTCCGGTATGCAACACTACCTGGAAAGACGTTCCTCTTCTCTCCGTTCACAAGAATCAAAACGACGGCGTTGCTGAGATCCCAAGCAAACCGCCGCCGAAAGTGGAGGACAAGAAGGTGATCGAATATTCATCGCCTAGAGCAATTACAACCGAAAATGAAAAGCAGATCAAGCTCTCGGAATATTCTAGATCTTATGATGACGATGAGCCGCTGTTATCTCCGACCTCCTGCGGCCGGTTTGTTCCGATTCCGGAGGCAGATGAGAACGGCGATGACGAAGAGGATCATCATGAGGTTGAACAAGAGTTTCAGAAATTTTGCGTTAATCCGATTAATCAACAAATTCACGGCAAGGAATATTCTAGAAGCAATGTGCAGGTTAGACTTCTTCCAGAATCCGCCATGATCTCCGCCGGACGCAGCTACAAGACTTACGCCGTGGCTCTAAGAGTCAAAGCACCGCCGTCTGTATCACTTCTAGAACCTTCTAGACGAGCACCGATCGATTTAGTTACAGTGCTGGATATAAGCGCGAGCATGACCGGTCCAAAACTGCTGATGCTTAAGCGAGCTATGCGCTTAGTCATATCGTCTCTCGGCTCATCTGACCGGCTCTCTATTGTAGCTTTCTCGGCTAGTCCTAGACGGCTCTTGCCGTTGAGGAGAATGACGGTCCAGGGTCAGCGGTCAGCTCGTCGGATTGTTGACCAGCTCATTTGCGGTCAGGGTAGTAGTGTAGGAGAAGCGTTGAGAAAAGCTACTAAAGTGCTTGAAGATCGAAGGGATAGAAATTCCATTGCAAGTATTATGCTTCTGTCCGATGGTCAGGACGAGCGGGCCCACAAGAACGGGAAAAATCATCGGCAGACTGCTCAACACAAGTACTCTACTCGGTTCGCTCATATTGAGATCCCGATCCATTCGTTCGGGTTCGGAGAAAATGGGGCCCACAGCCAGGAGCCTGGCGAAGAGGCCTTTGCGAAATGCGTAGGCGGATTGTTGAGTGTGGTGGTTCAGGACTTGAGGGTTCAGCTCGGGGTGGGACGGGGTTCGGGTCCGGTTGAGATATCGGCTATTTACTCATGTCATGGACGGCCCACACTCTGTAGCTCGGGTTCAGTCCGGATTGGGGATTTATTTGCCGGTGAAGAGAGGGAGCTACTCGTGGAACTCCGGGTCCCGACTACGGCCGTAACCGGGTCTCCCTATATGATGATGTCAGTTCAATGCCTTTACAAGGACCCGTCGAGCCAAGAAGTTGTTTATGGAAGAGAGCAGGCCTTATTGGTTCCTCAACTCCAAGCCGTCCGACCGAGCGGGACTAAGATCGAACGGCTGAGAAATTTGTTCATAACGACCCGAGCCATAGCGGAGTCGAGGAGATTGATTGAGCATGATGATTATACGAGCGCCCATCATTTGCTCACATCAGCCCGAGCTTTACTCATGCAAGCCAGCTCCGTTGCGGCGGACGAGTATGTTCGGGGATTGGAGGCCGAGCTAGAAGAGCTTCATTGGTGGAGACAGCAGCAGCAACAGCAAATATTTATGATCCAAAGGAAAGAGATGTTAGGTTTGGTGGATGAGAATGGTGAGCCGCTTACGCCGACTTCCGCTTGGAGAGCGGCTGAGAAGCTGGCTAAGGTTGCCATACTGAAGAAGTCGTTGACCAGTAGGGTCAGCGATTTACACGGCTTCGAAAACGCTAGGTTTTAA 2229 51.14 MGTGWRRAFCHTIPRDPQSRFSDNPQSKSASPSPRSCVRLRFLSGSISNPSTPRLQSNHQPVSGPSLRCRTTEEITTPKTTPSPTAECETATPKLTKSQKPLRATSNPSSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGQGTAIYTAECAHAFHFSCIADHIRKHNRLSCPVCNTTWKDVPLLSVHKNQNDGVAEIPSKPPPKVEDKKVIEYSSPRAITTENEKQIKLSEYSRSYDDDEPLLSPTSCGRFVPIPEADENGDDEEDHHEVEQEFQKFCVNPINQQIHGKEYSRSNVQVRLLPESAMISAGRSYKTYAVALRVKAPPSVSLLEPSRRAPIDLVTVLDISASMTGPKLLMLKRAMRLVISSLGSSDRLSIVAFSASPRRLLPLRRMTVQGQRSARRIVDQLICGQGSSVGEALRKATKVLEDRRDRNSIASIMLLSDGQDERAHKNGKNHRQTAQHKYSTRFAHIEIPIHSFGFGENGAHSQEPGEEAFAKCVGGLLSVVVQDLRVQLGVGRGSGPVEISAIYSCHGRPTLCSSGSVRIGDLFAGEERELLVELRVPTTAVTGSPYMMMSVQCLYKDPSSQEVVYGREQALLVPQLQAVRPSGTKIERLRNLFITTRAIAESRRLIEHDDYTSAHHLLTSARALLMQASSVAADEYVRGLEAELEELHWWRQQQQQQIFMIQRKEMLGLVDENGEPLTPTSAWRAAEKLAKVAILKKSLTSRVSDLHGFENARF 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3269715 3272921 + Conep20aG0058900.1 Cone20ag0572 460476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0572 742 SMART ring_2 130 174 IPR001841 -
Cone20ag0572 742 MobiDBLite consensus disorder prediction 42 114 - -
Cone20ag0572 742 SMART VWA_4 338 522 IPR002035 -
Cone20ag0572 742 Pfam von Willebrand factor type A domain 341 447 IPR002035 -
Cone20ag0572 742 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 253 IPR013083 -
Cone20ag0572 742 Gene3D von Willebrand factor, type A domain 340 504 IPR036465 -
Cone20ag0572 742 SUPERFAMILY vWA-like 338 513 IPR036465 -
Cone20ag0572 742 SUPERFAMILY RING/U-box 123 180 - -
Cone20ag0572 742 ProSiteProfiles Zinc finger RING-type profile. 130 175 IPR001841 -
Cone20ag0572 742 Pfam Ring finger domain 129 175 IPR001841 -
Cone20ag0572 742 CDD vWA_C3HC4_type 339 509 - -
Cone20ag0572 742 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 128 740 IPR051266 -
Cone20ag0572 742 MobiDBLite consensus disorder prediction 1 114 - -
Cone20ag0572 742 ProSiteProfiles VWFA domain profile. 340 485 IPR002035 -
Cone20ag0572 742 MobiDBLite consensus disorder prediction 17 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0572 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1307 Cone-Chr11:9654759 Cone20ag0572 Cone-Chr20:3269715 4.54E-84 dispersed
Cone18ag0522 Cone-Chr18:2579271 Cone20ag0572 Cone-Chr20:3269715 1.74E-74 dispersed
Cone1ag0477 Cone-Chr1:4598124 Cone20ag0572 Cone-Chr20:3269715 1.22E-69 dispersed
Cone20ag0572 Cone-Chr20:3269715 Cone5ag1243 Cone-Chr5:5806845 4.22E-75 dispersed
Cone17ag1157 Cone-Chr17:8536106 Cone20ag0572 Cone-Chr20:3269715 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g562 Blo01g01789 . Bda01g00923 . Bpe02g00152 . . Bma01g02574 Cmo05g00592 . . . . . Sed04g0234 . . Bhi04g00900 Tan02g2512 Cmetu03g0168 . Hepe10g0402 . . Cla08g01186 Cam08g1651 Cec08g1227 Cco08g1346 Clacu08g1347 . Cre08g1133 . . Cone17ag1157 Cone20ag0572 . . . . Blo17g00085 Blo18g00728 . Bda13g01346 Bpe02g01168 Bpe14g00499 Bma01g01363 Bma02g00100 . . . . Cma05g00566 . . . . . . . . . . . . . . . . . . Lsi08g01049 Csa02g02233 Chy03g01284 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001939 4 2 3 5 5 2 0 2 2 2 2 2 4 0 2 3 2 2 0 2 2 2 2 2 1 1 2 3 2 3 66