Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0573 ATGGCGGCTTCTGTATCGATCAATTTCGCCTGCGCGAAGTTGGAGGCGCTGTGGTTGAGATCTCCGTCGACGTCGTCGTCTTCTTCGTTGAGAGCGGCGGTGTCGACTTCTTGTAAGTTTCCGGTGTCTTGTAAATCAGTGCGGGGCAGAAGAACTCCTTTTCAGCGTGGAGAAGTGTTTTCGTTGAAGCCAGTGAGGTGCGAGGATGCTGCTTCTTCCTCCTCCGATGTTCTTGTTCAGAACGGTGATGGAATCGGTCAGATTAGTAATGCTTCTAATATTTCCGCGCTCGAACAGCTCAAGACCTCCGCAGCTGATAGATATACAAAAGAAAGGAGCAGCATTGTAGTGATTGGGCTTAGCATTCATACAACACCAGTTGAGATGCGTGAAAAGCTTGCCATTCCGGAAGCAGAGTGGCCTCGAGCAATAGGAGAGTTATGTGGTTTAAACCATATAGAAGAAGCAGCTGTTCTTAGCACCTGCAATAGAATGGAGATATATGTTGTGGCTTTGTCTCAACATCGTGGTGTAAAAGAAGTCACTGAATGGATGTCGAAGACAAGTGGGATCCCTGTTTCAGAAATTTGTCAGCACCGGTTTTTGCTCTATAACAATGATGCAACGCAACACCTCTTTGAAGTATCATCTGGTCTGGACTCCCTAGTCCTAGGAGAAGGTCAAATCCTTGCTCAGGTCAAGCAAGTCGTCAAAGTGGGCCAGGGTGTAGTCGGGTTTGGAAGGAACGTTAGCGGGCTCTTCAAGCACGCAATATCAGTTGGGAAACGGGTCAGGACCGAGACTAACATTGCTGCAGGGGCAGTTTCTGTAAGCTCCGCAGCCGTAGAATTGGCCTTGATGAAGCTTCCAGAAGCTTCTCACTGTACTTGCAGAATACTCGTAATAGGAGCAGGGAAAATGGGGAAGCTTGTAATAAAACACTTGGTAGCAAAAGGGAGTAAAAGCATGGTGGTCGTGAATAGAAGCGAAGAGAAAGTCACAGCAATCAGAGAAGAATTCACAGATATTGAGATAATCTACAAACCTCTTACGGAAATGCTGGCTTGTGCAGCTGAAGCAGATGTGATTTTTACTAGCACTGCTTCAGAAACTCCTCTGTTTTTGAAAGAACATGTTAAAGAACTCCCCTCAGTTGGACCAGAAGTAGGAGGAAGACGACTTTTTGTTGACATCTCTGTTCCTAGAAATGTCGGGTCTTGTGTGAATGACCAAGAAAACGTTCAGGTTTACAATGTGGATGATCTCAAGGAAGTTGTAGCTGCCAATAAGGAAGAGAGGCTCAGAAAAGCAATGGAGGCTCAAGCAATAATTACAGAGGAATCTAAACAATTCGAAGCATGGAGAGATTCACTAGAGACAGTTCCTACCATCAAGAAACTAAGGGCTTATGCAGAGAGAATCAGAGTGGCTGAGCTAGACAAGTGCTTATCCAAGATGGGTGATGATGTATGTAAGAAGACTAGAAAAGCCGTTGACGATCTTAGCAGAGGCATAGTAAACAAGCTTCTTCATGGACCGATGCAGCATTTGAGATGTGATGGGAGTGATAGCAGGACTTTGAGTGAGACTCTCGAAAATATGCACGCTCTTAATAGAATGTTCAGTCTTGAGACGGAAATTGCCGTTTTGGAGCAGAAGATCAGAGCCAAAGTGGAGCAAAACCAGAAGTGA 1692 45.45 MAASVSINFACAKLEALWLRSPSTSSSSSLRAAVSTSCKFPVSCKSVRGRRTPFQRGEVFSLKPVRCEDAASSSSDVLVQNGDGIGQISNASNISALEQLKTSAADRYTKERSSIVVIGLSIHTTPVEMREKLAIPEAEWPRAIGELCGLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVSEICQHRFLLYNNDATQHLFEVSSGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNVSGLFKHAISVGKRVRTETNIAAGAVSVSSAAVELALMKLPEASHCTCRILVIGAGKMGKLVIKHLVAKGSKSMVVVNRSEEKVTAIREEFTDIEIIYKPLTEMLACAAEADVIFTSTASETPLFLKEHVKELPSVGPEVGGRRLFVDISVPRNVGSCVNDQENVQVYNVDDLKEVVAANKEERLRKAMEAQAIITEESKQFEAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDVCKKTRKAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLSETLENMHALNRMFSLETEIAVLEQKIRAKVEQNQK 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3275911 3278539 - Conep20aG0059000.1 Cone20ag0573 460477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0573 563 FunFam Glutamyl-tRNA reductase 273 432 - -
Cone20ag0573 563 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 273 433 IPR036291 -
Cone20ag0573 563 Coils Coil 540 560 - -
Cone20ag0573 563 Gene3D - 274 426 - -
Cone20ag0573 563 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 114 270 IPR036343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cone20ag0573 563 FunFam Glutamyl-tRNA reductase 114 273 - -
Cone20ag0573 563 NCBIfam glutamyl-tRNA reductase 115 523 IPR000343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cone20ag0573 563 ProSitePatterns Glutamyl-tRNA reductase signature. 211 234 IPR018214 GO:0008883(InterPro)
Cone20ag0573 563 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 118 268 IPR015895 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cone20ag0573 563 Hamap Glutamyl-tRNA reductase [hemA]. 114 541 IPR000343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cone20ag0573 563 Pfam Shikimate / quinate 5-dehydrogenase 284 425 IPR006151 -
Cone20ag0573 563 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 439 543 IPR015896 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cone20ag0573 563 CDD NAD_bind_Glutamyl_tRNA_reduct 115 437 - -
Cone20ag0573 563 Gene3D - 113 273 IPR036343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cone20ag0573 563 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 15 560 - -
Cone20ag0573 563 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 437 523 IPR036453 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0573 K02492 - - csv:101220615 858.981
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1156 Cone-Chr17:8530428 Cone20ag0573 Cone-Chr20:3275911 0 wgd
Cone20ag0573 Cone-Chr20:3275911 Cone4ag1273 Cone-Chr4:10466429 2.05E-296 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g563 . . Bda01g00924 . . . . . Cmo05g00593 . . . . . Sed04g0235 . . Bhi04g00899 Tan02g2513 Cmetu03g1732 . Hepe10g0401 . Lcy13g1452 Cla08g01187 Cam08g1652 Cec08g1228 Cco08g1347 Clacu08g1348 . Cre08g1134 Cone4ag1273 . Cone17ag1156 Cone20ag0573 . . . Cme03g01777 Blo17g00084 Blo18g00094 . Bda13g01345 Bpe02g01169 Bpe14g00500 Bma01g01362 Bma02g00099 . . . . Cma05g00567 Car05g00511 . Cpe11g00496 . . . . . . . . . . . . . . . Lsi08g01050 Csa02g02234 Chy03g01283 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007166 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 2 37