Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0577 ATGCCTACTCCTCCTCCTATCTTCTTCCTTCTTTTCACACTAACATCTATCTCTTATCATCAATCTCAAGCCATCACTACTCCTACTACTGCTACAAACCAGTCTCACTTCTTCACCCTTATGAGAAAAACACATTCCGGGAACATTTTATCTGATTGGGATTTTTCTAAAAGTCCTTTCTGCAACTTCACCGGAGTCACCTGCAATGATGGAGGTTATGTCACCGAAATTGATCTTTCAGGAAATCTACTCTCCGGCACCTTTCCGGCAGATGTATGCTCTTATCTTCCATACTTGACTAATCTTCATCTAGGAAAAACGGGTCTCCGTGGTACCTTTCCTCAAGGCCTTACCAACTGCTCTCTCATGGAACAACTCGACCTCAATTCTCTATACCTCTCTGGACCTCTTCCGAATTTCTCAGTGGTCAAATCTCTCCGGCTACTCGACCTCTCATACAACCTTTTCTCGGGTGAGTTTCCCATGTCGGTTTTCAGCCTTGTCAATCTTGAAGCTCTAAATTTCAATGAAAACAATAACTTGAACTTATGGCAATTACCCGAAAACATCTCGAAACTAACCAACCTCAAATTCATGGTCTTAACAACATGTATGGTGCATGGAAAAATCCCAAAATCTATCTCAAACTTGACATCTCTTGTCGATCTTGAATCGAGCGGGAGCTTTCTAGTAGGTGAGATTCCAAAAGAAATTGGATTGTTGAAGACTCTGCAACATCTCGAGCTGTACTACAATCTCTTAACTGGAAAGATACCCGAAGAGCTCGGAAATTTAACCAACCTAACCGACTTAGACATGTCGATCAATCAGTTACAAGGAAACCTTCCGGAAAGTATATGCCGTCTTCCAAACCTCAACGTGTTGCAGTTTTACAATAACAGCCTTACCGGAGAAATCCCTACCGTGATTGCTAATTCGACAAGCCTAACAATGTTGTCGCTTTATGATAACTCTTTGACCGGAGAAGTTCCAGAAAGTTTAGGGCAGTTATCTGCTATGGTTGTCCTAGACTTGTCTGAAAATCTTCTCTCCGGTCCGTTGCCTACGGATGTTTGTAGAAAAGGTAAGTTACAATACTTTCTTGTCTTGGAAAATATGTTTTCAGGTGAAATACCGGTTAGTTACGAGAAATGCGAATCTCTATTACGGTTTCGAATCAGTTCTAACCGACTTACAGGCCCCGTCCCAGATGGCCTTCTGGGCATCCCTCATGTTTCTATCATTGATGTCTCGTACAACAAGTTAAGTGGAAAAATTCCAAATTCAATCGTAAATGCAAGAAACTTGTCCGAGTTGTTCATGCAAGGCAATATGATTGAAGGAGCTATACCTTCCGGAATATCCCGAGCAGTCAATTTGGTGAAGATTGATCTAAGCAATAATCTTTTGTCAGGTCCAATACCTTCCAAGATCGGAAACCTAAAGAAGCTAAACTTGCTTTTGCTACAAGGCAACAAGATCAACTCGTTGATCCCCGATTCACTCTCTTTGATAAAATCTCTTAACGTTCTTGATCTTTCGAGTAATCTCTTGAACGGAAAAATCCCAGAAAGTCTAAGTGAATTGTTACCAAACTCCATCAACTTTACAAACAATCAACTTTCGGGTCCAATACCTATATCTTTACTCAGAGGAGGATTAGCTGAAAGCTTTTTTGGAAATCCCGGCCTTTGTGTTCCGGTCTATTTCATCTCATCCGAGCAAAATTTTCCCATTTGCTCACAACCTTGCAGCCAAAAGAAGCTAAAATCCGTCTGGGCGATCGGAATCTCAATCCTTATCATAGTTATCGGATCCGTTTTGTTTCTAAAAAGTTGTCTTAGTAAGAAAAAACCTTCAAATGAACATGATCGTCAACAGATGGTCTCTTCATCGTTCTTCTCGTTTGATGTAAAGAGCTTCCATAGAATAAATTTTGATCAACGGGAAATAATTGAAGCGATGGTCGATAAGAACATAGTGGGCCATGGTGGGTCTGGAACCGTTTACAAGATCGAATTGAGCACTGGAGAAGTAGTTGCAGCTAAGAAGCTATGGAGTTGA 2064 40.99 MPTPPPIFFLLFTLTSISYHQSQAITTPTTATNQSHFFTLMRKTHSGNILSDWDFSKSPFCNFTGVTCNDGGYVTEIDLSGNLLSGTFPADVCSYLPYLTNLHLGKTGLRGTFPQGLTNCSLMEQLDLNSLYLSGPLPNFSVVKSLRLLDLSYNLFSGEFPMSVFSLVNLEALNFNENNNLNLWQLPENISKLTNLKFMVLTTCMVHGKIPKSISNLTSLVDLESSGSFLVGEIPKEIGLLKTLQHLELYYNLLTGKIPEELGNLTNLTDLDMSINQLQGNLPESICRLPNLNVLQFYNNSLTGEIPTVIANSTSLTMLSLYDNSLTGEVPESLGQLSAMVVLDLSENLLSGPLPTDVCRKGKLQYFLVLENMFSGEIPVSYEKCESLLRFRISSNRLTGPVPDGLLGIPHVSIIDVSYNKLSGKIPNSIVNARNLSELFMQGNMIEGAIPSGISRAVNLVKIDLSNNLLSGPIPSKIGNLKKLNLLLLQGNKINSLIPDSLSLIKSLNVLDLSSNLLNGKIPESLSELLPNSINFTNNQLSGPIPISLLRGGLAESFFGNPGLCVPVYFISSEQNFPICSQPCSQKKLKSVWAIGISILIIVIGSVLFLKSCLSKKKPSNEHDRQQMVSSSFFSFDVKSFHRINFDQREIIEAMVDKNIVGHGGSGTVYKIELSTGEVVAAKKLWS 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3317756 3319819 + Conep20aG0059400.1 Cone20ag0577 460481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0577 687 Pfam Leucine rich repeat N-terminal domain 46 69 IPR013210 -
Cone20ag0577 687 Gene3D Ribonuclease Inhibitor 182 288 IPR032675 -
Cone20ag0577 687 FunFam Leucine-rich repeat receptor-like protein kinase 183 285 - -
Cone20ag0577 687 ProSitePatterns Protein kinases ATP-binding region signature. 661 684 IPR017441 GO:0005524(InterPro)
Cone20ag0577 687 SMART LRR_typ_2 481 504 IPR003591 -
Cone20ag0577 687 SMART LRR_typ_2 337 361 IPR003591 -
Cone20ag0577 687 SMART LRR_typ_2 167 193 IPR003591 -
Cone20ag0577 687 SMART LRR_typ_2 265 289 IPR003591 -
Cone20ag0577 687 SMART LRR_typ_2 505 529 IPR003591 -
Cone20ag0577 687 SMART LRR_sd22_2 505 528 - -
Cone20ag0577 687 SMART LRR_sd22_2 313 339 - -
Cone20ag0577 687 SMART LRR_sd22_2 457 483 - -
Cone20ag0577 687 SMART LRR_sd22_2 265 291 - -
Cone20ag0577 687 SMART LRR_sd22_2 241 264 - -
Cone20ag0577 687 PANTHER DI-GLUCOSE BINDING PROTEIN WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 412 550 - -
Cone20ag0577 687 FunFam Leucine-rich repeat receptor-like protein kinase TDR 286 557 - -
Cone20ag0577 687 Pfam Leucine Rich Repeat 315 337 IPR001611 GO:0005515(InterPro)
Cone20ag0577 687 Pfam Leucine Rich Repeat 413 432 IPR001611 GO:0005515(InterPro)
Cone20ag0577 687 Pfam Leucine Rich Repeat 145 166 IPR001611 GO:0005515(InterPro)
Cone20ag0577 687 Pfam Leucine Rich Repeat 507 529 IPR001611 GO:0005515(InterPro)
Cone20ag0577 687 Pfam Leucine Rich Repeat 459 481 IPR001611 GO:0005515(InterPro)
Cone20ag0577 687 Pfam Leucine Rich Repeat 244 265 IPR001611 GO:0005515(InterPro)
Cone20ag0577 687 Pfam Leucine Rich Repeat 267 289 IPR001611 GO:0005515(InterPro)
Cone20ag0577 687 Gene3D Ribonuclease Inhibitor 37 181 IPR032675 -
Cone20ag0577 687 Gene3D Ribonuclease Inhibitor 299 574 IPR032675 -
Cone20ag0577 687 SUPERFAMILY RNI-like 281 551 - -
Cone20ag0577 687 SUPERFAMILY RNI-like 74 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0577 Cone-Chr20:3317756 Cone4ag1197 Cone-Chr4:10087329 3.68E-17 dispersed
Cone17ag1224 Cone-Chr17:8867978 Cone20ag0577 Cone-Chr20:3317756 7.70E-06 wgd
Cone17ag1151 Cone-Chr17:8480964 Cone20ag0577 Cone-Chr20:3317756 5.59E-172 wgd
Cone20ag0577 Cone-Chr20:3317756 Cone4ag1266 Cone-Chr4:10422660 3.15E-65 wgd
Cone20ag0577 Cone-Chr20:3317756 Cone7ag0878 Cone-Chr7:6807374 3.19E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0577 - - - 0.0