Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone20ag0578 | ATGCCGAATGGTAATCTTTGGGACGCTCTTCATGGCAAGTATGTGCATCTGGATTGGCCTACTCGGCATCAAATTGCGCTCGGGATAGCTCAGGGTTTGGCTTATTTACACCACGATCTCTTGCCTCCTATCATTCACAGAGATATCAAGACTACAAATATTCTGTTAGATGCTAACTACCAGCCAAGAGTTGCGGATTTCGGAATTGCTAAGGTTTTGCAAGCGAGAGGAAGCAAGGATTCGACCACCACTGTTGTTGCCGGGACTTACGGTTATTTGGCCCCAGAATATGCGTATTCCTCAAAGGCGACGACAAAGTGTGATGTCTATAGCTTTAGAGTCGTGTTAATGGAGCTGATAACGGGGAAGAAGCCAGTAGAGGCGGAGTTTGGAGAAAACCGGAACATTATCTATTGGGTTTCGAACAAAGTGGACACGAAGGACGGAGCAATAGAAGTTTTGGACAAAAGATTATTGGTTTCGTTCCAGGATGAAATGATTAAGGTTCTCCGAATTGCTATCCATTGTACTTACAAGAACCCGGCCCTTCGCCCTACCATGAAAGAAGTCATTCGGTTACTTACTGAAGCAGACCCTTGTGGATTCTATTCTTGCAAGGTATCAAATAAGACCAAGGATTTGGCAAGTGACACTCAGATTAAGAACCCATCTGAGGTATGA | 681 | 44.64 | MPNGNLWDALHGKYVHLDWPTRHQIALGIAQGLAYLHHDLLPPIIHRDIKTTNILLDANYQPRVADFGIAKVLQARGSKDSTTTVVAGTYGYLAPEYAYSSKATTKCDVYSFRVVLMELITGKKPVEAEFGENRNIIYWVSNKVDTKDGAIEVLDKRLLVSFQDEMIKVLRIAIHCTYKNPALRPTMKEVIRLLTEADPCGFYSCKVSNKTKDLASDTQIKNPSEV | 226 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 3319973 | 3320934 | + | Conep20aG0059500.1 | Cone20ag0578 | 460482 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone20ag0578 | 226 | FunFam | leucine-rich repeat receptor-like protein kinase TDR | 1 | 204 | - | - | |
| Cone20ag0578 | 226 | Pfam | Protein kinase domain | 1 | 191 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cone20ag0578 | 226 | PIRSF | ILK | 1 | 199 | - | - | |
| Cone20ag0578 | 226 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 | 1 | 196 | IPR051564 | GO:0016020(PANTHER) | |
| Cone20ag0578 | 226 | SMART | serkin_6 | 1 | 201 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cone20ag0578 | 226 | ProSiteProfiles | Protein kinase domain profile. | 1 | 203 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cone20ag0578 | 226 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1 | 211 | - | - | |
| Cone20ag0578 | 226 | SUPERFAMILY | Protein kinase-like (PK-like) | 1 | 194 | IPR011009 | - | |
| Cone20ag0578 | 226 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 44 | 56 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone20ag0578 | Cone-Chr20:3319973 | Cone7ag0878 | Cone-Chr7:6807374 | 3.67E-118 | dispersed | |
| Cone20ag0578 | Cone-Chr20:3319973 | Cone9ag1416 | Cone-Chr9:10501865 | 7.21E-50 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 82547 | PF13041 | PPR_2 | 1.90E-09 | CL0020 | Cone | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone20ag0578 | - | - | - | 0.0 |