Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0589 ATGTTCGATAATATTACGGGAAATTCCACGGATTCATCGTCTGTTACCGTCGTTGATACGGCGTGCAATTCCTCGTCGGTTTCCGGTTGTGATCCTCTGGGGTTTTCGGGGGATATCGGTTGCCGGAATTTTCCGGACGGTCAATTCTCTGGCGACCTCTGCGTCCCGTGTGAGGATTTAGCTGAACTAGAATGGCTTTCGAATTTCGTGGAAGAATCATTCTCGAGCGACGACTTGCAAAAGCTGCAGCTGATATCGGGAATGAAAGCTCAGCCCGCCGACGAAGCATCTGAAACACGAGAATTCCAGCCCGAGCCAAACCAAGACAATACTACTACTATCCCGACTTTCCACCCGGCCGACATGTCGGTCCCGGCAAAGGCCCGAAGCAAACGCTCCCGTGCGACCCCATGCAACTGGACGTCCCGACTCCTCGTACTGTCTCCAACAACCTCCTCGTCCGAAACTGATGTTGCCATCCCGGCCCCACTCAATTGCTCCAAGAAAGTGATCAAGACCTCCGCTCCGAAGAAGAAGGAAGTTGTCACGGACAGCATGTTGTCCGGGAGTAGTAGTGCAGGGGACGGGCGTAAATGTTTGCATTGCGCGACGGACAAAACACCTCAGTGGCGGACTGGGCCGATGGGGCCAAAGACACTATGTAATGCTTGTGGGGTCCGGTACAAGTCCGGTCGGCTTGTGCCCGAGTATCGGCCCGCAGCAAGCCCAACATTTGTTCTAAAAATGCACTCCAACTCGCACCGTAAGGTGTTGGAGCTACGACGGCAAAAGGATATGATTCGGTCCCATCCGCATCAGCAGCAACAACATCAACAACATCAACATCATCACCAACAATTCCTTAACCATCATCAAAACATGAGGTTTGAAGTATCCAACACTGACGATTACTTGATTCATCAACACGTGGGGCCCACTTTGGGGAAGTCGTTGATCTAA 960 52.08 MFDNITGNSTDSSSVTVVDTACNSSSVSGCDPLGFSGDIGCRNFPDGQFSGDLCVPCEDLAELEWLSNFVEESFSSDDLQKLQLISGMKAQPADEASETREFQPEPNQDNTTTIPTFHPADMSVPAKARSKRSRATPCNWTSRLLVLSPTTSSSETDVAIPAPLNCSKKVIKTSAPKKKEVVTDSMLSGSSSAGDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLKMHSNSHRKVLELRRQKDMIRSHPHQQQQHQQHQHHHQQFLNHHQNMRFEVSNTDDYLIHQHVGPTLGKSLI 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3397840 3398903 - Conep20aG0060600.1 Cone20ag0589 460493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0589 319 FunFam GATA transcription factor 190 280 - -
Cone20ag0589 319 MobiDBLite consensus disorder prediction 89 120 - -
Cone20ag0589 319 ProSiteProfiles GATA-type zinc finger domain profile. 193 229 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0589 319 Pfam GATA zinc finger 199 233 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0589 319 Gene3D - 193 243 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cone20ag0589 319 PANTHER GATA TRANSCRIPTION FACTOR 32 265 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cone20ag0589 319 SMART GATA_3 193 243 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0589 319 MobiDBLite consensus disorder prediction 103 118 - -
Cone20ag0589 319 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 195 256 - -
Cone20ag0589 319 CDD ZnF_GATA 198 245 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0589 319 ProSitePatterns GATA-type zinc finger domain. 199 224 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0589 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1302 Cone-Chr11:9622548 Cone20ag0589 Cone-Chr20:3397840 7.51E-35 dispersed
Cone20ag0589 Cone-Chr20:3397840 Cone20ag1264 Cone-Chr20:8275669 5.01E-80 dispersed
Cone16ag0712 Cone-Chr16:8322705 Cone20ag0589 Cone-Chr20:3397840 1.05E-60 wgd
Cone17ag1134 Cone-Chr17:8386146 Cone20ag0589 Cone-Chr20:3397840 3.99E-191 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone17ag1134 . 87 384 C2C2-Gata Transcription Factor Family AT5G25830 50.8 5.8e-68 255.4
Cone20ag0589 . 24 318 C2C2-Gata Transcription Factor Family AT5G25830 51.9 7.6e-68 255.0
Cone14ag0515 . 1 241 C2C2-Gata Transcription Factor Family AT2G45050 54.3 8.5e-46 181.4
Cone15ag0541 . 1 237 C2C2-Gata Transcription Factor Family AT3G60530 50.2 3.2e-52 202.6
Cone14ag0515 . 1 237 C2C2-Gata Transcription Factor Family AT3G60530 53.6 2.8e-48 189.5
Cone6ag0635 . 1 510 C2C2-Gata Transcription Factor Family AT4G17570 54.3 4.7e-133 472.2
Cone9ag0640 . 1 526 C2C2-Gata Transcription Factor Family AT4G17570 52.6 1.0e-132 471.1
Cone12ag0412 . 1 482 C2C2-Gata Transcription Factor Family AT4G17570 51.1 1.7e-119 427.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45609 PF00856 SET 4.90E-19 No_clan Cone TF