Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0589 ATGTTCGATAATATTACGGGAAATTCCACGGATTCATCGTCTGTTACCGTCGTTGATACGGCGTGCAATTCCTCGTCGGTTTCCGGTTGTGATCCTCTGGGGTTTTCGGGGGATATCGGTTGCCGGAATTTTCCGGACGGTCAATTCTCTGGCGACCTCTGCGTCCCGTGTGAGGATTTAGCTGAACTAGAATGGCTTTCGAATTTCGTGGAAGAATCATTCTCGAGCGACGACTTGCAAAAGCTGCAGCTGATATCGGGAATGAAAGCTCAGCCCGCCGACGAAGCATCTGAAACACGAGAATTCCAGCCCGAGCCAAACCAAGACAATACTACTACTATCCCGACTTTCCACCCGGCCGACATGTCGGTCCCGGCAAAGGCCCGAAGCAAACGCTCCCGTGCGACCCCATGCAACTGGACGTCCCGACTCCTCGTACTGTCTCCAACAACCTCCTCGTCCGAAACTGATGTTGCCATCCCGGCCCCACTCAATTGCTCCAAGAAAGTGATCAAGACCTCCGCTCCGAAGAAGAAGGAAGTTGTCACGGACAGCATGTTGTCCGGGAGTAGTAGTGCAGGGGACGGGCGTAAATGTTTGCATTGCGCGACGGACAAAACACCTCAGTGGCGGACTGGGCCGATGGGGCCAAAGACACTATGTAATGCTTGTGGGGTCCGGTACAAGTCCGGTCGGCTTGTGCCCGAGTATCGGCCCGCAGCAAGCCCAACATTTGTTCTAAAAATGCACTCCAACTCGCACCGTAAGGTGTTGGAGCTACGACGGCAAAAGGATATGATTCGGTCCCATCCGCATCAGCAGCAACAACATCAACAACATCAACATCATCACCAACAATTCCTTAACCATCATCAAAACATGAGGTTTGAAGTATCCAACACTGACGATTACTTGATTCATCAACACGTGGGGCCCACTTTGGGGAAGTCGTTGATCTAA 960 52.08 MFDNITGNSTDSSSVTVVDTACNSSSVSGCDPLGFSGDIGCRNFPDGQFSGDLCVPCEDLAELEWLSNFVEESFSSDDLQKLQLISGMKAQPADEASETREFQPEPNQDNTTTIPTFHPADMSVPAKARSKRSRATPCNWTSRLLVLSPTTSSSETDVAIPAPLNCSKKVIKTSAPKKKEVVTDSMLSGSSSAGDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLKMHSNSHRKVLELRRQKDMIRSHPHQQQQHQQHQHHHQQFLNHHQNMRFEVSNTDDYLIHQHVGPTLGKSLI 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3397840 3398903 - Conep20aG0060600.1 Cone20ag0589 460493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0589 319 FunFam GATA transcription factor 190 280 - -
Cone20ag0589 319 MobiDBLite consensus disorder prediction 89 120 - -
Cone20ag0589 319 ProSiteProfiles GATA-type zinc finger domain profile. 193 229 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0589 319 Pfam GATA zinc finger 199 233 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0589 319 Gene3D - 193 243 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cone20ag0589 319 PANTHER GATA TRANSCRIPTION FACTOR 32 265 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cone20ag0589 319 SMART GATA_3 193 243 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0589 319 MobiDBLite consensus disorder prediction 103 118 - -
Cone20ag0589 319 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 195 256 - -
Cone20ag0589 319 CDD ZnF_GATA 198 245 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0589 319 ProSitePatterns GATA-type zinc finger domain. 199 224 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1302 Cone-Chr11:9622548 Cone20ag0589 Cone-Chr20:3397840 7.51E-35 dispersed
Cone20ag0589 Cone-Chr20:3397840 Cone20ag1264 Cone-Chr20:8275669 5.01E-80 dispersed
Cone16ag0712 Cone-Chr16:8322705 Cone20ag0589 Cone-Chr20:3397840 1.05E-60 wgd
Cone17ag1134 Cone-Chr17:8386146 Cone20ag0589 Cone-Chr20:3397840 3.99E-191 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45609 PF00856 SET 4.90E-19 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0589 - - - 0.0