Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0590 ATGAAGCCTGGTCCGGATTCCATTGGAATCATTGCTATTTCTCACAGTTGCACTGGTGTTGCAGCACGTGCATGTGGCCTTGTAGGTCTAGAACCTACGAGAGTGGCTGAAATCTTAAAAGACCGGCCTTCTTGGTACCGCAGTTGCCGAGCAGTGGAAATTCTGAATGTACTGTCCACTGCGAATGGTGGAACCATTGAACTGCTGTACATGCAGCTCTATGCACCCACAACTTTGGCTCCAGCTCGTGATTTCTGGTTGTTGCGCTATACTTCGGTTTTGGAGGATGGTAGTCTTGTGGTCTGTGAAAGATCACTTAACAACACTCAGAATGGTCCTAGTATGCCACCGGTTCAAAATTTTGTAAGAGCAGAAATGCTTCCAAGTGGGTATCTGATTAGACCATGTGAAGGGAGTGGATCAATCATTCATATAGTTGACCATGTGGACTTGGAGCCTTGGAGCGTACCTGAGGTGTTGCGCCCGCTCTATGAGTCATCAGCACTGCTTGCTCAGAAGACCACAATGGCTGCTTTACGCCAGTTGAGACAGATATCTCAAGAAGTTTCTCAGCCCAATGCATCTGGCTGGGGAAGAAGACCAGCTGCTCTACGCTCACTTAGTCAGAGATTAAACAGGGGTTTCAATGAAGCTGTCAATGGGTTTACAGATGAGGGATGGTCAATGTTAGAAAGTGATGGCGTTGATGATGTTACACTTCTTGTGAACTCATCTCCTAGCAAGATGATGGGCGTAAATCTTTCCTATCCCAATGGATTTCCATCTATGAGCAATGCAGTGCTATGTGCCAAAGCATCCATGCTGCTACAAGACGTGCCTCCAGCAATACTTCTTCGGTTCTTGAGGGAACACCGATCAGAATGGGCAGATAGTAGTATTGATGCTTATTCAGCTGCAGCCATTAAAGCTGGTCCGTGTAGCTTAGTGGGCTCTCGAGCTGGAAGTTTTGGGGGTCAGGTTATTCTTCCACTGGCTCATACAATAGAGCATGAGGAGTTCATGGAGGTCATCAAACTTGAGAATATGGGCCACTATCGTGATGATATGTTTATGCCGGGTGACATCTTCCTCCTTCAACTTTGCAGTGGTGTAGATGAAAATGCTATTGGAACTTCTTCTGAACTCATCTTTGCTCCTATTGATGCTTCCTTTTCTGATGATGCGCCTATTCTACCTTCTGGTTTTCGCATCATTCCTCTCGATTCGAAAATGGATGCCTCAAGTCCTAACCGTACACTTGACCTTGCCTCTGCTCTTGAAGTTGGAACCACTACAGCAAACCGAGCTTTTGGGGACTCTTCTGGACAATCTGGGACCACAAAATCTGTAATGACAATAGCCTTCCAATTTGCATTCGAGATTCACCTTCAAGATAATGTAGCTGTCATGGCTAGACAATATGTCAGGAGTATTATAGCTTCTGTTCAGAGGGTAGCACTTGCACTTTCTCCTTCTCGTTTCGGATCTCATTCTGGTCTTAGGCTGCCACCTGGCAGCCCTGAAGCTCAGACACTAGCCCGTTGGATATCTAATAGCTATAGGTGCTATCTAGGAGTAGAATTAATGAAAAGTGAAGGCAGTGAATCCATTCTCGCATCGCTATGGCATTACTCCGATGCAATCATGTGCTGCTCTTTGAAGCCATTGCCAGTTTTCACTTTTGCAAATCAGGCAGGACTTGACATGCTCGAGACCACCTTGGTAGCACTTCAGGACATAACTCTCGAAAAGATTTTCGATGATAACGGAAAGAAGAATCTATGCACAGAGTTCCCACAGATAATGCAACAGGGATTTATGTGTCTACAAGGCGGTATCTGCTTGTCAAGTATGGGAAGGCCGGTTTCTTACGAGAAAGCAGTGGCTTGGAAGGTATTGAATGAAGAAGAAAGTGCTCATTGTATCTGTTTCATGTTTGTCAACTGGTCTTTTGTTTAA 1959 45.38 MKPGPDSIGIIAISHSCTGVAARACGLVGLEPTRVAEILKDRPSWYRSCRAVEILNVLSTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPPVQNFVRAEMLPSGYLIRPCEGSGSIIHIVDHVDLEPWSVPEVLRPLYESSALLAQKTTMAALRQLRQISQEVSQPNASGWGRRPAALRSLSQRLNRGFNEAVNGFTDEGWSMLESDGVDDVTLLVNSSPSKMMGVNLSYPNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADSSIDAYSAAAIKAGPCSLVGSRAGSFGGQVILPLAHTIEHEEFMEVIKLENMGHYRDDMFMPGDIFLLQLCSGVDENAIGTSSELIFAPIDASFSDDAPILPSGFRIIPLDSKMDASSPNRTLDLASALEVGTTTANRAFGDSSGQSGTTKSVMTIAFQFAFEIHLQDNVAVMARQYVRSIIASVQRVALALSPSRFGSHSGLRLPPGSPEAQTLARWISNSYRCYLGVELMKSEGSESILASLWHYSDAIMCCSLKPLPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKNLCTEFPQIMQQGFMCLQGGICLSSMGRPVSYEKAVAWKVLNEEESAHCICFMFVNWSFV 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3410290 3414134 + Conep20aG0060700.1 Cone20ag0590 460494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0590 652 FunFam homeobox-leucine zipper protein ATHB-15 11 192 - -
Cone20ag0590 652 Pfam MEKHLA domain 511 651 IPR013978 -
Cone20ag0590 652 Gene3D - 12 191 IPR023393 -
Cone20ag0590 652 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 652 IPR044830 GO:0003700(InterPro)
Cone20ag0590 652 ProSiteProfiles START domain profile. 21 194 IPR002913 GO:0008289(InterPro)
Cone20ag0590 652 SMART START_1 1 185 IPR002913 GO:0008289(InterPro)
Cone20ag0590 652 SUPERFAMILY Bet v1-like 2 186 - -
Cone20ag0590 652 Pfam START domain 2 184 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0143 Cone-Chr17:733744 Cone20ag0590 Cone-Chr20:3410290 0 dispersed
Cone20ag0590 Cone-Chr20:3410290 Cone20ag1266 Cone-Chr20:8282202 0 dispersed
Cone17ag1132 Cone-Chr17:8371084 Cone20ag0590 Cone-Chr20:3410290 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0590 K09338 - mdm:103441156 1159.44