Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone20ag0599 | ATGATAAGAGAGTTACACAATTCAGAAACAGAAAGCAGCAGCTCAAACTCCTCTACTCCATCTCCACCATCTTCACAGCAAGACCAACCCAATAAGAAAATTAAACGAATCCGGGATTCAAACAAACACCCGGTTTATCGTGGGGTTCGCATGAGGAACTGGGGCAAATGGGTATCGGAAATCCGAGAGCCCCGGAAAAAATCCCGCATTTGGCTCGGGACATTCCCGACCCCTGAAATGGCTGCCCGGGCCCACGACGTGGCAGCTTTGAGCATCAAGGGCAGCTCCGCTATCCTCAACTTCCCGGACCTGATTGGGTCGCTCCCCCGCCCCGCTTCGCTAGCCCCGCGTGATATCCAGGCTGCCGCTGCTAAGGCGGCTCAGATGGATAAGATTGGGCCAGGGCTCGCTACGGATCACTCCTCATCCGAGAATTCATTGTCGTCAATTGTTTCGTCCATGGCCGGGTTGTCTTCCGAGGAGGAGGAGGAGCTAAGTGAGATCGTGGAGTTGCCGAGTCTGGAAACGAGTTATGACGTGGCAAATGAGTTTGTTTACGTGGAGGAGGTTAGCCATGATCATGGCTGGTTGGAGCAACCTCTTCCATGGATACAGAGCTTGGAGGTGTATAATAACAATAATTACAGTGGGGGAAGTGGTACTAATAATACGGATGATCAGTTGCTTCATGATTTGTTGTGGGATTATAATTAA | 714 | 50.84 | MIRELHNSETESSSSNSSTPSPPSSQQDQPNKKIKRIRDSNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSSAILNFPDLIGSLPRPASLAPRDIQAAAAKAAQMDKIGPGLATDHSSSENSLSSIVSSMAGLSSEEEEELSEIVELPSLETSYDVANEFVYVEEVSHDHGWLEQPLPWIQSLEVYNNNNYSGGSGTNNTDDQLLHDLLWDYN | 237 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 3503235 | 3504318 | - | Conep20aG0061600.1 | Cone20ag0599 | 460503 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone20ag0599 | 237 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 16 | 196 | IPR051032 | - | |
Cone20ag0599 | 237 | Gene3D | AP2/ERF domain | 45 | 103 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone20ag0599 | 237 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Cone20ag0599 | 237 | CDD | AP2 | 46 | 104 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone20ag0599 | 237 | SUPERFAMILY | DNA-binding domain | 45 | 103 | IPR016177 | GO:0003677(InterPro) | |
Cone20ag0599 | 237 | ProSiteProfiles | AP2/ERF domain profile. | 45 | 102 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone20ag0599 | 237 | SMART | rav1_2 | 45 | 108 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone20ag0599 | 237 | PRINTS | Ethylene responsive element binding protein signature | 68 | 84 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone20ag0599 | 237 | PRINTS | Ethylene responsive element binding protein signature | 46 | 57 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone20ag0599 | 237 | Pfam | AP2 domain | 44 | 94 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone20ag0599 | 237 | MobiDBLite | consensus disorder prediction | 7 | 30 | - | - | |
Cone20ag0599 | 237 | FunFam | Ethylene-responsive transcription factor 2 | 44 | 103 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone11ag0497 | Cone-Chr11:2554738 | Cone20ag0599 | Cone-Chr20:3503235 | 3.25E-38 | dispersed | |
Cone17ag0153 | Cone-Chr17:766808 | Cone20ag0599 | Cone-Chr20:3503235 | 5.86E-53 | dispersed | |
Cone18ag1009 | Cone-Chr18:7471657 | Cone20ag0599 | Cone-Chr20:3503235 | 1.07E-37 | dispersed | |
Cone20ag0599 | Cone-Chr20:3503235 | Cone7ag1181 | Cone-Chr7:8804049 | 6.05E-55 | dispersed | |
Cone17ag1123 | Cone-Chr17:8317270 | Cone20ag0599 | Cone-Chr20:3503235 | 9.52E-135 | wgd | |
Cone20ag0599 | Cone-Chr20:3503235 | Cone4ag1240 | Cone-Chr4:10302694 | 7.03E-35 | wgd | |
Cone20ag0599 | Cone-Chr20:3503235 | Cone7ag0894 | Cone-Chr7:6995942 | 3.81E-39 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45610 | PF10502 | Peptidase_S26 | 2.50E-35 | CL0299 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone20ag0599 | K09286 | - | cit:102608812 | 231.106 |