Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0599 ATGATAAGAGAGTTACACAATTCAGAAACAGAAAGCAGCAGCTCAAACTCCTCTACTCCATCTCCACCATCTTCACAGCAAGACCAACCCAATAAGAAAATTAAACGAATCCGGGATTCAAACAAACACCCGGTTTATCGTGGGGTTCGCATGAGGAACTGGGGCAAATGGGTATCGGAAATCCGAGAGCCCCGGAAAAAATCCCGCATTTGGCTCGGGACATTCCCGACCCCTGAAATGGCTGCCCGGGCCCACGACGTGGCAGCTTTGAGCATCAAGGGCAGCTCCGCTATCCTCAACTTCCCGGACCTGATTGGGTCGCTCCCCCGCCCCGCTTCGCTAGCCCCGCGTGATATCCAGGCTGCCGCTGCTAAGGCGGCTCAGATGGATAAGATTGGGCCAGGGCTCGCTACGGATCACTCCTCATCCGAGAATTCATTGTCGTCAATTGTTTCGTCCATGGCCGGGTTGTCTTCCGAGGAGGAGGAGGAGCTAAGTGAGATCGTGGAGTTGCCGAGTCTGGAAACGAGTTATGACGTGGCAAATGAGTTTGTTTACGTGGAGGAGGTTAGCCATGATCATGGCTGGTTGGAGCAACCTCTTCCATGGATACAGAGCTTGGAGGTGTATAATAACAATAATTACAGTGGGGGAAGTGGTACTAATAATACGGATGATCAGTTGCTTCATGATTTGTTGTGGGATTATAATTAA 714 50.84 MIRELHNSETESSSSNSSTPSPPSSQQDQPNKKIKRIRDSNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSSAILNFPDLIGSLPRPASLAPRDIQAAAAKAAQMDKIGPGLATDHSSSENSLSSIVSSMAGLSSEEEEELSEIVELPSLETSYDVANEFVYVEEVSHDHGWLEQPLPWIQSLEVYNNNNYSGGSGTNNTDDQLLHDLLWDYN 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3503235 3504318 - Conep20aG0061600.1 Cone20ag0599 460503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0599 237 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 196 IPR051032 -
Cone20ag0599 237 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0599 237 MobiDBLite consensus disorder prediction 1 43 - -
Cone20ag0599 237 CDD AP2 46 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0599 237 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677(InterPro)
Cone20ag0599 237 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0599 237 SMART rav1_2 45 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0599 237 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0599 237 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0599 237 Pfam AP2 domain 44 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0599 237 MobiDBLite consensus disorder prediction 7 30 - -
Cone20ag0599 237 FunFam Ethylene-responsive transcription factor 2 44 103 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0497 Cone-Chr11:2554738 Cone20ag0599 Cone-Chr20:3503235 3.25E-38 dispersed
Cone17ag0153 Cone-Chr17:766808 Cone20ag0599 Cone-Chr20:3503235 5.86E-53 dispersed
Cone18ag1009 Cone-Chr18:7471657 Cone20ag0599 Cone-Chr20:3503235 1.07E-37 dispersed
Cone20ag0599 Cone-Chr20:3503235 Cone7ag1181 Cone-Chr7:8804049 6.05E-55 dispersed
Cone17ag1123 Cone-Chr17:8317270 Cone20ag0599 Cone-Chr20:3503235 9.52E-135 wgd
Cone20ag0599 Cone-Chr20:3503235 Cone4ag1240 Cone-Chr4:10302694 7.03E-35 wgd
Cone20ag0599 Cone-Chr20:3503235 Cone7ag0894 Cone-Chr7:6995942 3.81E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45610 PF10502 Peptidase_S26 2.50E-35 CL0299 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0599 K09286 - cit:102608812 231.106